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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.315690 (132 seq.)
>W1710875592
LMON01000001
Actinomycetota
Arthrobacter sp. Leaf145 [LMON]
1049448
1049523
+
Arg
TCT
[ENA]
¡û
>W1710876303
LMPC01000023
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
250097
250172
+
Arg
TCT
[ENA]
¡û
>W1710880009
LMSB01000005
Actinomycetota
Arthrobacter sp. Soil736 [LMSB]
93706
93781
+
Arg
TCT
[ENA]
¡û
>W1710880295
LMSG01000001
Actinomycetota
Arthrobacter sp. Soil762 [LMSG]
490112
490187
+
Arg
TCT
[ENA]
¡û
>W1710880367
LMSH01000002
Actinomycetota
Arthrobacter sp. Soil763 [LMSH]
1221640
1221567
-
Arg
TCT
[ENA]
¡û
>W1710916207
LNUV01000004
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
298561
298636
+
Arg
TCT
[ENA]
¡û
>W1710995756
LQAP01000015
Actinomycetota
Arthrobacter sp. B6 [LQAP]
142411
142486
+
Arg
TCT
[ENA]
¡û
>W1711124387
LUKB01000048
Actinomycetota
Arthrobacter sp. D2 [LUKB]
26207
26282
+
Arg
TCT
[ENA]
¡û
>W1711124461
LUKC01000069
Actinomycetota
Arthrobacter sp. D4 [LUKC]
26207
26282
+
Arg
TCT
[ENA]
¡û
>W1711719310
MTIC01000001
Actinomycetota
Sinomonas mesophila [MTIC]
113804
113731
-
Arg
TCT
[ENA]
¡û
>W1711768830
MVDG01000057
Actinomycetota
Arthrobacter sp. KBS0703 [MVDG]
36407
36332
-
Arg
TCT
[ENA]
¡û
>W1711853244
MYFE01000513
Actinomycetota
Arthrobacter globiformis [MYFE]
9825
9752
-
Arg
TCT
[ENA]
¡û
>C171040602
CP015732
Actinomycetota
Arthrobacter sp. U41 [CP015732]
3916941
3917016
+
Arg
TCT
-
¡û
>C171062229
CP017421
Actinomycetota
Arthrobacter sp. ZXY-2 [CP017421]
1625225
1625300
+
Arg
TCT
-
¡û
>W131172237
ARGT01000029
Actinomycetota
Arthrobacter sp. 131MFCol6.1 [ARGT]
734673
734748
+
Arg
TCT
[ENA]
¡û
>C000078
CP000474
Actinomycetota
Paenarthrobacter aurescens TC1 [CP000474]
2638735
2638663
-
Arg
TCT
[Ensembl]
¡û
>C001001
CP000454
Actinomycetota
Arthrobacter sp. FB24 [CP000454]
2715875
2715947
+
Arg
TCT
[Ensembl]
¡û
>WENV180016377
FSUT01000247
[FSUT] metagenome; soil
2966
3039
+
Arg
TCT
[ENA]
¡û
>WENV180018441
FSZH01000084
[FSZH] metagenome; soil
2814
2887
+
Arg
TCT
[ENA]
¡û
>WENV180025648
FTIP01244268
[FTIP] metagenome; soil
276
203
-
Arg
TCT
[ENA]
¡û
>W141106050
AVPD01000001
Actinomycetota
Arthrobacter sp. AK-YN10 [AVPD]
388375
388300
-
Arg
TCT
[ENA]
¡û
>W141213506
AZSB01000127
Actinomycetota
Arthrobacter sp. I3 [AZSB]
23338
23263
-
Arg
TCT
[ENA]
¡û
>W141216746
AZVC01000017
Actinomycetota
Paenarthrobacter nicotinovorans 231Sha2.1M6 [AZVC]
28658
28733
+
Arg
TCT
[ENA]
¡û
>W141278893
JAFW01000001
Actinomycetota
Arthrobacter sp. 31Y [JAFW]
368470
368395
-
Arg
TCT
[ENA]
¡û
>C181000311
AP014718
Actinomycetota
Arthrobacter sp. Hiyo4 [AP014718]
2112778
2112851
+
Arg
TCT
-
¡û
>C181064984
CP022436
Actinomycetota
Arthrobacter sp. YN [CP022436]
3048518
3048443
-
Arg
TCT
-
¡û
>C191164645
CP039290
Actinomycetota
Arthrobacter sp. PAMC25564 [CP039290]
2243970
2243897
-
Arg
TCT
-
¡û
>C191174053
CP040018
Actinomycetota
Arthrobacter sp. 24S4-2 [CP040018]
3428949
3429022
+
Arg
TCT
-
¡û
>C191188279
CP041188
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502772 [CP041188]
3322509
3322582
+
Arg
TCT
-
¡û
>W141565195
JIBJ01000004
Actinomycetota
Arthrobacter sp. 9MFCol3.1 [JIBJ]
96964
96889
-
Arg
TCT
[ENA]
¡û
>W141701998
JMLE01000001
Actinomycetota
Arthrobacter sp. UNC362MFTsu5.1 [JMLE]
43077
43002
-
Arg
TCT
[ENA]
¡û
>W09102070
AAHG01000024
Actinomycetota
Arthrobacter sp. FB24 [AAHG]
33863
33936
+
Arg
TCT
[ENA]
¡û
>W1810167368
PJIK01000021
Actinomycetota
Arthrobacter sp. ZGTC131 [PJIK]
3221
3294
+
Arg
TCT
[ENA]
¡û
>W1810167913
PJIW01000003
Actinomycetota
Arthrobacter sp. 4R501 [PJIW]
261060
261133
+
Arg
TCT
[ENA]
¡û
>W1810172006
PJMC01000006
Actinomycetota
Arthrobacter sp. AFG20 [PJMC]
35993
35920
-
Arg
TCT
[ENA]
¡û
>W2010459590
JAAGBD010000006
Actinomycetota
Arthrobacter sp. AAC22 [JAAGBD]
67982
67907
-
Arg
TCT
[ENA]
¡û
>W2010534619
JAAOZD010000004
Actinomycetota
Paenarthrobacter ilicis CECT 4207 [JAAOZD]
26604
26679
+
Arg
TCT
[ENA]
¡û
>W2010598941
JABFMX010000001
Actinomycetota
Arthrobacter sp. C9C5 [JABFMX]
72820
72747
-
Arg
TCT
[ENA]
¡û
>W2010608020
JABMCX010000354
Actinomycetota
Paenarthrobacter sp. CM16 [JABMCX]
2052
2127
+
Arg
TCT
[ENA]
¡û
>W2010788874
LVCB01000032
Actinomycetota
Arthrobacter sp. M5 [LVCB]
26207
26282
+
Arg
TCT
[ENA]
¡û
>W2011165393
OIVI01000076
Actinomycetota
Arthrobacter alpinus [OIVI]
9994
10067
+
Arg
TCT
[ENA]
¡û
>W2011179081
PCPC01000009
Actinomycetota
Arthrobacter sp. MYb51 [PCPC]
128284
128211
-
Arg
TCT
[ENA]
¡û
>W2011179800
PCPR01000019
Actinomycetota
Arthrobacter sp. MYb23 [PCPR]
78225
78152
-
Arg
TCT
[ENA]
¡û
>W2011260438
QJQZ01000041
Actinomycetota
Paenarthrobacter nitroguajacolicus xwA8 [QJQZ]
14054
13980
-
Arg
TCT
[ENA]
¡û
>W2011369066
RBED01000104
Actinomycetota
Arthrobacter oryzae TNB02 [RBED]
26192
26119
-
Arg
TCT
[ENA]
¡û
>W2011553571
SDXQ01000036
Actinomycetota
Arthrobacter sp. TS-15 [SDXQ]
30383
30456
+
Arg
TCT
[ENA]
¡û
>W2011952552
UXAU01000040
Actinomycetota
Pseudarthrobacter sp. T11b [UXAU]
69542
69468
-
Arg
TCT
[ENA]
¡û
>W2012000944
VEGI01000001
Actinomycetota
Arthrobacter sp. U41 DE0109 [VEGI]
541673
541748
+
Arg
TCT
[ENA]
¡û
>W2012094640
VNFK01000010
Actinomycetota
Paenarthrobacter nitroguajacolicus SM1928 [VNFK]
74060
74133
+
Arg
TCT
[ENA]
¡û
>W2110026938
BMIS01000008
Actinomycetota
Nesterenkonia cremea CGMCC 1.15388 [BMIS]
110860
110787
-
Arg
TCT
[ENA]
¡û
>W2110035336
BMPM01000004
Actinomycetota
Paenarthrobacter histidinolovorans JCM 2520 [BMPM]
30194
30269
+
Arg
TCT
[ENA]
¡û
>W2110038672
BMRR01000002
Actinomycetota
Paenarthrobacter nicotinovorans JCM 3874 [BMRR]
28822
28897
+
Arg
TCT
[ENA]
¡û
>W2110156267
JAAOXD010000001
Actinomycetota
Arthrobacter ipsi IA7 [JAAOXD]
421360
421287
-
Arg
TCT
[ENA]
¡û
>W2110458593
JAFBCD010000001
Actinomycetota
Paenarthrobacter ilicis DSM 20138 [JAFBCD]
2297703
2297628
-
Arg
TCT
[ENA]
¡û
>W2110498003
JAFHKT010000145
Actinomycetota
Arthrobacter pascens DSM 20545 [JAFHKT]
251996
252071
+
Arg
TCT
[ENA]
¡û
>W2110499307
JAFIBI010000001
Actinomycetota
Arthrobacter sp. PvP023 [JAFIBI]
2319066
2318993
-
Arg
TCT
[ENA]
¡û
>W2110543274
JAGGPK010000020
Actinomycetota
Arthrobacter sp. ISL-30 [JAGGPK]
69692
69765
+
Arg
TCT
[ENA]
¡û
>W2110543300
JAGGPL010000003
Actinomycetota
Arthrobacter sp. ISL-48 [JAGGPL]
351736
351661
-
Arg
TCT
[ENA]
¡û
>W2110543568
JAGGPR010000001
Actinomycetota
Arthrobacter sp. ISL-95 [JAGGPR]
30212
30285
+
Arg
TCT
[ENA]
¡û
>W2110553334
JAGINX010000001
Actinomycetota
Nesterenkonia lacusekhoensis DSM 12544 [JAGINX]
1116682
1116755
+
Arg
TCT
[ENA]
¡û
>W2110553441
JAGINZ010000001
Actinomycetota
Paenarthrobacter nicotinovorans DSM 420 [JAGINZ]
3848585
3848660
+
Arg
TCT
[ENA]
¡û
>W2110555926
JAGIXT010000007
Actinomycetota
Paenarthrobacter ureafaciens MPD2 [JAGIXT]
26292
26367
+
Arg
TCT
[ENA]
¡û
>W2110563139
JAGPOT010000021
Actinomycetota
Pseudarthrobacter sp. NJ-Z5 [JAGPOT]
69707
69782
+
Arg
TCT
[ENA]
¡û
>W2110603294
JAHHIO010000005
Actinomycetota
Arthrobacter sp. GN70 [JAHHIO]
30391
30317
-
Arg
TCT
[ENA]
¡û
>W2110635492
JAHOPC010000008
Actinomycetota
Paenarthrobacter sp. MMS21-TAE1-1 [JAHOPC]
28969
29042
+
Arg
TCT
[ENA]
¡û
>C201084662
CP040174
Actinomycetota
Arthrobacter sp. UKPF54-2 [CP040174]
2631140
2631067
-
Arg
TCT
-
¡û
>C211024599
AP024630
Actinomycetota
Arthrobacter sp. NtRootA1 [AP024630]
3196266
3196193
-
Arg
TCT
-
¡û
>C211024853
AP024639
Actinomycetota
Arthrobacter sp. NtRootC45 [AP024639]
2509525
2509450
-
Arg
TCT
-
¡û
>C211024905
AP024641
Actinomycetota
Arthrobacter sp. NtRootD5 [AP024641]
2509525
2509450
-
Arg
TCT
-
¡û
>C211024957
AP024643
Actinomycetota
Arthrobacter sp. StoSoilA2 [AP024643]
2947361
2947288
-
Arg
TCT
-
¡û
>C211025009
AP024644
Actinomycetota
Arthrobacter sp. StoSoilB3 [AP024644]
2616878
2616803
-
Arg
TCT
-
¡û
>C211025062
AP024646
Actinomycetota
Arthrobacter sp. StoSoilB5 [AP024646]
3386378
3386305
-
Arg
TCT
-
¡û
>C211025100
AP024647
Actinomycetota
Arthrobacter sp. StoSoilB13 [AP024647]
1101601
1101528
-
Arg
TCT
-
¡û
>C211025195
AP024651
Actinomycetota
Arthrobacter sp. StoSoilB20 [AP024651]
2814810
2814735
-
Arg
TCT
-
¡û
>C211025284
AP024653
Actinomycetota
Arthrobacter sp. NicSoilB4 [AP024653]
2384825
2384900
+
Arg
TCT
-
¡û
>C211025333
AP024655
Actinomycetota
Arthrobacter sp. NicSoilB8 [AP024655]
3019497
3019570
+
Arg
TCT
-
¡û
>C211025496
AP024661
Actinomycetota
Arthrobacter sp. NicSoilE8 [AP024661]
2535913
2535838
-
Arg
TCT
-
¡û
>C211030273
CP014571
Actinomycetota
Arthrobacter sp. D5-1 [CP014571]
2755830
2755755
-
Arg
TCT
-
¡û
>C211030301
CP014574
Actinomycetota
Paenarthrobacter ureafaciens DnL1-1 [CP014574]
2628777
2628852
+
Arg
TCT
-
¡û
>C211058775
CP043178
Actinomycetota
Pseudarthrobacter sp. NBSH8 [CP043178]
2418605
2418678
+
Arg
TCT
-
¡û
>C211093910
CP053544
Actinomycetota
Paenarthrobacter sp. YJN-5 [CP053544]
2069947
2070022
+
Arg
TCT
-
¡û
>C211093991
CP053549
Actinomycetota
Paenarthrobacter sp. YJN-D [CP053549]
946542
946467
-
Arg
TCT
-
¡û
>C211152242
CP061721
Actinomycetota
Pseudarthrobacter sp. BIM B-2242 [CP061721]
2361894
2361969
+
Arg
TCT
-
¡û
>C211159603
CP062235
Actinomycetota
Arthrobacter sp. TES [CP062235]
3521349
3521424
+
Arg
TCT
-
¡û
>W1510018498
BBUD01000196
Actinomycetota
Arthrobacter sp. Hiyo1 [BBUD]
478
405
-
Arg
TCT
[ENA]
¡û
>C231051363
CP044532
Actinomycetota
Arthrobacter sp. CDRTa11 [CP044532]
3204763
3204836
+
Arg
TCT
-
¡û
>C231193818
CP084561
Actinomycetota
Arthrobacter sp. FW305-BF8 [CP084561]
2944192
2944265
+
Arg
TCT
-
¡û
>C231193885
CP084564
Actinomycetota
Arthrobacter sp. FW305-123 [CP084564]
2469139
2469066
-
Arg
TCT
-
¡û
>C231259780
CP089293
Actinomycetota
Paenarthrobacter nicotinovorans ATCC 49919 [CP089293]
2447366
2447291
-
Arg
TCT
-
¡û
>C231262684
CP089515
Actinomycetota
Paenarthrobacter nicotinovorans nic- [CP089515]
2445077
2445002
-
Arg
TCT
-
¡û
>W2110750853
MQTO01000088
Actinomycetota
Arthrobacter sp. ES1 [MQTO]
8976
9051
+
Arg
TCT
[ENA]
¡û
>C231345115
CP094489
Actinomycetota
Paenarthrobacter ureafaciens AT [CP094489]
2510017
2509942
-
Arg
TCT
-
¡û
>C231374497
CP096882
Actinomycetota
Pseudarthrobacter sp. SSS035 [CP096882]
3942920
3942845
-
Arg
TCT
-
¡û
>W2110757887
PZKO01000060
Actinomycetota
Pseudarthrobacter sp. AB1 [PZKO]
32311
32238
-
Arg
TCT
[ENA]
¡û
>C231433324
CP101180
Actinomycetota
Paenarthrobacter ureafaciens SD-2 [CP101180]
2601247
2601172
-
Arg
TCT
-
¡û
>C231499797
CP104877
Actinomycetota
Paenarthrobacter sp. JL.01a [CP104877]
2595302
2595229
-
Arg
TCT
-
¡û
>W2110770911
UZAA01000076
Actinomycetota
Arthrobacter alpinus [UZAA]
9994
10067
+
Arg
TCT
[ENA]
¡û
>C231622386
CP119414
Actinomycetota
Paenarthrobacter sp. Y-19 [CP119414]
2122551
2122476
-
Arg
TCT
-
¡û
>C231664845
OX352321
Actinomycetota
Arthrobacter sp. MM222 [OX352321]
2638470
2638545
+
Arg
TCT
-
¡û
>C241071202
CP043010
Actinomycetota
Paenarthrobacter ureafaciens YL1 [CP043010]
2606969
2606894
-
Arg
TCT
-
¡û
>C241126521
CP047898
Actinomycetota
Pseudarthrobacter psychrotolerans YJ56 [CP047898]
1296283
1296356
+
Arg
TCT
-
¡û
>W2130031403
JAFNLL010000028
Actinomycetota
Arthrobacter sp. PO-11 [JAFNLL]
102576
102649
+
Arg
TCT
[ENA]
¡û
>C241248426
CP123579
Actinomycetota
Paenarthrobacter sp. OM7 [CP123579]
2665270
2665195
-
Arg
TCT
-
¡û
>C241255186
CP124836
Actinomycetota
Arthrobacter sp. EM1 [CP124836]
2109621
2109696
+
Arg
TCT
-
¡û
>C241300136
CP132204
Actinomycetota
Arthrobacter oryzae AO2021 [CP132204]
4400644
4400717
+
Arg
TCT
-
¡û
>W2310027264
BSQI01000009
Actinomycetota
Paenarthrobacter ureafaciens NBRC 114184 [BSQI]
23768
23843
+
Arg
TCT
[ENA]
¡û
>W1510641781
CVLG01000002
Actinomycetota
Paenarthrobacter nitroguajacolicus HG [CVLG]
227029
226954
-
Arg
TCT
[ENA]
¡û
>W1511319631
JPZK01000027
Actinomycetota
Arthrobacter sp. MWB30 [JPZK]
226870
226795
-
Arg
TCT
[ENA]
¡û
>W1511523730
JYCN01000018
Actinomycetota
Arthrobacter sp. SPG23 [JYCN]
380839
380914
+
Arg
TCT
[ENA]
¡û
>C161001327
AP014719
Actinomycetota
Arthrobacter sp. Hiyo8 [AP014719]
4301320
4301247
-
Arg
TCT
-
¡û
>C161068076
CP014196
Actinomycetota
Arthrobacter sp. ATCC 21022 [CP014196]
2636708
2636633
-
Arg
TCT
-
¡û
>W121086841
AKKK01000062
Actinomycetota
Arthrobacter sp. M2012083 [AKKK]
63526
63451
-
Arg
TCT
[ENA]
¡û
>W121123821
BAEG01000074
Actinomycetota
Arthrobacter globiformis NBRC 12137 [BAEG]
23693
23620
-
Arg
TCT
[ENA]
¡û
>W1610041998
BAXI01000393
Actinomycetota
Nesterenkonia sp. JCM 19054 [BAXI]
1845
1918
+
Arg
TCT
[ENA]
¡û
>W1610081885
BDDW01000003
Actinomycetota
Paenarthrobacter nicotinovorans [BDDW]
407410
407335
-
Arg
TCT
[ENA]
¡û
>C131002328
CP003203
Actinomycetota
Arthrobacter sp. Rue61a [CP003203]
2817675
2817602
-
Arg
TCT
[Ensembl]
¡û
>W1610527141
JPWK01000035
Actinomycetota
Arthrobacter sp. ATCC 21022 ATCC 21022 KY 3901 [JPWK]
26487
26562
+
Arg
TCT
[ENA]
¡û
>W1610734383
LMLR01000011
Actinomycetota
Arthrobacter sp. Leaf69 [LMLR]
353361
353436
+
Arg
TCT
[ENA]
¡û
>W1610737938
LMON01000001
Actinomycetota
Arthrobacter sp. Leaf145 [LMON]
1049448
1049523
+
Arg
TCT
[ENA]
¡û
>W1610738649
LMPC01000023
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
250097
250172
+
Arg
TCT
[ENA]
¡û
>W1610742355
LMSB01000005
Actinomycetota
Arthrobacter sp. Soil736 [LMSB]
93706
93781
+
Arg
TCT
[ENA]
¡û
>W1610742641
LMSG01000001
Actinomycetota
Arthrobacter sp. Soil762 [LMSG]
490112
490187
+
Arg
TCT
[ENA]
¡û
>W1610742713
LMSH01000002
Actinomycetota
Arthrobacter sp. Soil763 [LMSH]
1221640
1221567
-
Arg
TCT
[ENA]
¡û
>W1610774446
LNUV01000004
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
298561
298636
+
Arg
TCT
[ENA]
¡û
>W1610850413
LQAP01000015
Actinomycetota
Arthrobacter sp. B6 [LQAP]
142411
142486
+
Arg
TCT
[ENA]
¡û
>W1710039092
BAXI01000393
Actinomycetota
Nesterenkonia sp. JCM 19054 [BAXI]
1845
1918
+
Arg
TCT
[ENA]
¡û
>W1710080600
BDDW01000003
Actinomycetota
Paenarthrobacter nicotinovorans [BDDW]
407410
407335
-
Arg
TCT
[ENA]
¡û
>W1710521076
FNGC01000006
Actinomycetota
Arthrobacter sp. ok362 [FNGC]
134148
134073
-
Arg
TCT
[ENA]
¡û
>W1710529002
FNNR01000003
Actinomycetota
Arthrobacter sp. cf158 [FNNR]
8722
8797
+
Arg
TCT
[ENA]
¡û
>W1710577619
FPAY01000002
Actinomycetota
Arthrobacter sp. ov118 [FPAY]
177958
177883
-
Arg
TCT
[ENA]
¡û
>W1710603450
FUZB01000010
Actinomycetota
Arthrobacter sp. 31Cvi3.1E [FUZB]
29158
29231
+
Arg
TCT
[ENA]
¡û
>W1710603539
FUZD01000017
Actinomycetota
Arthrobacter sp. 49Tsu3.1M3 [FUZD]
33298
33373
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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