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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.315778 (22 seq.)
>W131158416
AQUA01000010
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
4326
4251
-
Leu
TAA
[ENA]
¡û
>W131183108
ARRO01000004
Actinomycetota
actinobacterium SCGC AAA027-M14 [ARRO]
51757
51832
+
Leu
TAA
[ENA]
¡û
>WENV180111699
OAPN01144965
[OAPN] marine metagenome; 2011
263
336
+
Leu
TAA
[ENA]
¢þ
>WENV180357654
OBNN01053939
[OBNN] marine metagenome; Coastal water
291
218
-
Leu
TAA
[ENA]
¢þ
>WENV180377768
OBON01116811
[OBON] marine metagenome; sea water
366
291
-
Leu
TAA
[ENA]
¢þ
>WENV181369712
OFQP01025923
[OFQP] freshwater metagenome; Freshwater Lake
398
471
+
Leu
TAA
[ENA]
¢þ
>WENV181400206
OFSF01002447
[OFSF] wastewater metagenome; Exp Tend VB 100WW
3531
3604
+
Leu
TAA
[ENA]
¢þ
>WENV170601547
FUWD010179049
[FUWD] metagenome; unknown
544
469
-
Leu
TAA
[ENA]
¢þ
>WENV170617939
FUWD012944127
[FUWD] metagenome; unknown
271
198
-
Leu
TAA
[ENA]
¢þ
>WENV170619130
FUWD013000763
[FUWD] metagenome; unknown
530
457
-
Leu
TAA
[ENA]
¢þ
>C181018680
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
65341
65268
-
Leu
TAA
-
¡û
>C181020871
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
144209
144282
+
Leu
TAA
-
¡û
>C181020945
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
141941
142014
+
Leu
TAA
-
¡û
>C181020983
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
154862
154935
+
Leu
TAA
-
¡û
>C181021019
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
128839
128912
+
Leu
TAA
-
¡û
>C181021055
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
138044
138117
+
Leu
TAA
-
¡û
>C181021128
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
147263
147336
+
Leu
TAA
-
¡û
>C181021167
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
139136
139209
+
Leu
TAA
-
¡û
>C181021279
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
134195
134268
+
Leu
TAA
-
¡û
>WENV057619
AACY023300292
Marine microbial communities from Global Ocean Sampling (GOS)
836
761
-
Leu
TAA
[ENA]
>WENV057755
AACY023305595
Marine microbial communities from Global Ocean Sampling (GOS)
1097
1172
+
Leu
TAA
[ENA]
>WENV058238
AACY023322135
Marine microbial communities from Global Ocean Sampling (GOS)
1231
1156
-
Leu
TAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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