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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.315781 (49 seq.)
>W1711116084
LUAS01000093
Betaproteobacteria
Oligella sp. HMSC09E12 [LUAS]
126
51
-
Ala
TGC
[ENA]
¡û
>W1711185172
LWNE01000081
Betaproteobacteria
Oligella sp. HMSC05A10 [LWNE]
2001
2076
+
Ala
TGC
[ENA]
¡û
>WENV183714969
PDWI01214072
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
329
254
-
Ala
TGC
[ENA]
¢þ
>WENV170719715
LSQX01124109
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1598
1523
-
Ala
TGC
[ENA]
¢þ
>C181049070
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
269083
269158
+
Ala
TGC
-
¡û
>C181049073
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
395856
395931
+
Ala
TGC
-
¡û
>C181049077
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
781033
781108
+
Ala
TGC
-
¡û
>C181049935
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
264131
264206
+
Ala
TGC
-
¡û
>C181049938
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
389447
389522
+
Ala
TGC
-
¡û
>C181049942
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
766528
766603
+
Ala
TGC
-
¡û
>C181049972
CP021200
Betaproteobacteria
Taylorella equigenitalis 79-1587 [CP021200]
284956
285031
+
Ala
TGC
-
¡û
>C181049975
CP021200
Betaproteobacteria
Taylorella equigenitalis 79-1587 [CP021200]
420812
420887
+
Ala
TGC
-
¡û
>C181049979
CP021200
Betaproteobacteria
Taylorella equigenitalis 79-1587 [CP021200]
799432
799507
+
Ala
TGC
-
¡û
>C181050009
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
262801
262876
+
Ala
TGC
-
¡û
>C181050012
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
388788
388863
+
Ala
TGC
-
¡û
>C181050016
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
767098
767173
+
Ala
TGC
-
¡û
>C181050091
CP021246
Betaproteobacteria
Taylorella equigenitalis 98-0554 [CP021246]
263247
263322
+
Ala
TGC
-
¡û
>C181050094
CP021246
Betaproteobacteria
Taylorella equigenitalis 98-0554 [CP021246]
397723
397798
+
Ala
TGC
-
¡û
>C181050098
CP021246
Betaproteobacteria
Taylorella equigenitalis 98-0554 [CP021246]
774762
774837
+
Ala
TGC
-
¡û
>C181152571
CP027417
Betaproteobacteria
Oligella urethralis FDAARGOS_329 [CP027417]
399680
399755
+
Ala
TGC
-
¡û
>C181152588
CP027417
Betaproteobacteria
Oligella urethralis FDAARGOS_329 [CP027417]
2152554
2152479
-
Ala
TGC
-
¡û
>C181152597
CP027417
Betaproteobacteria
Oligella urethralis FDAARGOS_329 [CP027417]
1451081
1451006
-
Ala
TGC
-
¡û
>C191208058
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
254626
254701
+
Ala
TGC
-
¡û
>C191208061
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
390475
390550
+
Ala
TGC
-
¡û
>C191208065
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
769095
769170
+
Ala
TGC
-
¡û
>W1911595552
PNGK01000016
Betaproteobacteria
Oligella urethralis UMB0345 [PNGK]
45909
45984
+
Ala
TGC
[ENA]
¡û
>W1911595556
PNGK01000049
Betaproteobacteria
Oligella urethralis UMB0345 [PNGK]
434
509
+
Ala
TGC
[ENA]
¡û
>W1911595558
PNGK01000050
Betaproteobacteria
Oligella urethralis UMB0345 [PNGK]
431
506
+
Ala
TGC
[ENA]
¡û
>W1810701980
QMFX01000007
Betaproteobacteria
Taylorella equigenitalis 210217RC10635 [QMFX]
3999
3924
-
Ala
TGC
[ENA]
¡û
>W1511350721
JRMO01000023
Betaproteobacteria
Taylorella equigenitalis MCE529 [JRMO]
513
588
+
Ala
TGC
[ENA]
¡û
>W1511350723
JRMO01000025
Betaproteobacteria
Taylorella equigenitalis MCE529 [JRMO]
369
444
+
Ala
TGC
[ENA]
¡û
>W1511351540
JRNI01000026
Betaproteobacteria
Oligella urethralis DNF00040 [JRNI]
3801
3726
-
Ala
TGC
[ENA]
¡û
>C11122610
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
908685
908760
+
Ala
TGC
[Ensembl]
¡û
>C11122613
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
1040913
1040988
+
Ala
TGC
[Ensembl]
¡û
>C11122617
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
1419252
1419327
+
Ala
TGC
[Ensembl]
¡û
>W1511458937
JVJW01000075
Betaproteobacteria
Oligella urethralis 368_TASI [JVJW]
5118
5193
+
Ala
TGC
[ENA]
¡û
>W1511458940
JVJW01000082
Betaproteobacteria
Oligella urethralis 368_TASI [JVJW]
142
67
-
Ala
TGC
[ENA]
¡û
>W1511458942
JVJW01000083
Betaproteobacteria
Oligella urethralis 368_TASI [JVJW]
142
67
-
Ala
TGC
[ENA]
¡û
>W1511461249
JVMH01000093
Betaproteobacteria
Oligella urethralis 303_AMIM [JVMH]
70749
70824
+
Ala
TGC
[ENA]
¡û
>W1511461257
JVMH01000102
Betaproteobacteria
Oligella urethralis 303_AMIM [JVMH]
4844
4769
-
Ala
TGC
[ENA]
¡û
>W1511461260
JVMH01000109
Betaproteobacteria
Oligella urethralis 303_AMIM [JVMH]
5128
5203
+
Ala
TGC
[ENA]
¡û
>W1511461264
JVMH01000129
Betaproteobacteria
Oligella urethralis 303_AMIM [JVMH]
2111
2186
+
Ala
TGC
[ENA]
¡û
>W1511461266
JVMH01000130
Betaproteobacteria
Oligella urethralis 303_AMIM [JVMH]
2111
2186
+
Ala
TGC
[ENA]
¡û
>C121004834
CP003059
Betaproteobacteria
Taylorella asinigenitalis MCE3 [CP003059]
270908
270983
+
Ala
TGC
[Ensembl]
¡û
>C121004837
CP003059
Betaproteobacteria
Taylorella asinigenitalis MCE3 [CP003059]
379067
379142
+
Ala
TGC
[Ensembl]
¡û
>C121004861
CP003059
Betaproteobacteria
Taylorella asinigenitalis MCE3 [CP003059]
963574
963499
-
Ala
TGC
[Ensembl]
¡û
>C121009921
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
284956
285031
+
Ala
TGC
[Ensembl]
¡û
>C121009924
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
420805
420880
+
Ala
TGC
[Ensembl]
¡û
>C121009928
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
799416
799491
+
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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