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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.315796 (24 seq.)
>W1710988592
LPVJ01000005
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LPVJ]
7220
7145
-
Ala
TGC
[ENA]
¡û
>W1711082828
LSUQ01000034
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LSUQ]
19582
19657
+
Ala
TGC
[ENA]
¡û
>W1711148410
LVKL01000095
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LVKL]
6446
6371
-
Ala
TGC
[ENA]
¡û
>W1711795468
MWPS01000008
Bacillota
Ferroacidibacillus organovorans ferrooxidans [MWPS]
25989
25914
-
Ala
TGC
[ENA]
¡û
>C171118986
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
1722623
1722698
+
Ala
TGC
-
¡û
>C171119005
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
1828993
1829068
+
Ala
TGC
-
¡û
>C171119016
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
1841791
1841866
+
Ala
TGC
-
¡û
>C171119058
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
2887370
2887445
+
Ala
TGC
-
¡û
>C171119067
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3053831
3053906
+
Ala
TGC
-
¡û
>C171119095
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3263380
3263455
+
Ala
TGC
-
¡û
>C171119114
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3316525
3316600
+
Ala
TGC
-
¡û
>C171119121
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3436883
3436958
+
Ala
TGC
-
¡û
>C171119133
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3817913
3817988
+
Ala
TGC
-
¡û
>C171119153
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
4539712
4539637
-
Ala
TGC
-
¡û
>C171119181
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
18057
17982
-
Ala
TGC
-
¡û
>WENV170573962
FLYL01053910
[FLYL] hot springs metagenome; Sediment
416
491
+
Ala
TGC
[ENA]
¢þ
>C181070369
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
2929300
2929225
-
Ala
TGC
-
¡û
>C181070381
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
2608240
2608165
-
Ala
TGC
-
¡û
>W1910020576
BDUF01000070
Bacillota
Effusibacillus lacus skLN1 [BDUF]
138
63
-
Ala
TGC
[ENA]
¡û
>W1910020581
BDUF01000075
Bacillota
Effusibacillus lacus skLN1 [BDUF]
15820
15745
-
Ala
TGC
[ENA]
¡û
>W1910020606
BDUF01000101
Bacillota
Effusibacillus lacus skLN1 [BDUF]
2664
2589
-
Ala
TGC
[ENA]
¡û
>W1610843468
LPVJ01000005
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LPVJ]
7220
7145
-
Ala
TGC
[ENA]
¡û
>W1610921581
LSUQ01000034
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LSUQ]
19582
19657
+
Ala
TGC
[ENA]
¡û
>W1610959141
LVKL01000095
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LVKL]
6446
6371
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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