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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.315876 (34 seq.)
>W131112892
APOH01000028
Gammaproteobacteria
Acinetobacter bohemicus ANC 3994 [APOH]
27618
27693
+
Lys
CTT
[ENA]
¡û
>W1711088920
LSZG01000001
Gammaproteobacteria
Acinetobacter terrae SFC [LSZG]
227078
227153
+
Lys
CTT
[ENA]
¡û
>W1712003308
NEGD01000002
Gammaproteobacteria
Acinetobacter sp. ANC 4218 [NEGD]
161107
161032
-
Lys
CTT
[ENA]
¡û
>W1712003892
NEGL01000003
Gammaproteobacteria
Acinetobacter sp. ANC 4654 [NEGL]
215851
215926
+
Lys
CTT
[ENA]
¡û
>W1712003953
NEGM01000002
Gammaproteobacteria
Acinetobacter sp. ANC 4973 [NEGM]
220597
220672
+
Lys
CTT
[ENA]
¡û
>WENV181379719
OFRD01006767
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1620
1695
+
Lys
CTT
[ENA]
¡û
>W2010594674
JABERE010000028
Gammaproteobacteria
Acinetobacter sp. NIPH 2377 [JABERE]
31878
31953
+
Lys
CTT
[ENA]
¡û
>W2010594788
JABERG010000004
Gammaproteobacteria
Acinetobacter sp. ANC 4279 [JABERG]
119337
119412
+
Lys
CTT
[ENA]
¡û
>W2010594862
JABERH010000004
Gammaproteobacteria
Acinetobacter sp. ANC 4280 [JABERH]
65933
65858
-
Lys
CTT
[ENA]
¡û
>W2010594984
JABERJ010000006
Gammaproteobacteria
Acinetobacter sp. ANC 5084 [JABERJ]
246249
246324
+
Lys
CTT
[ENA]
¡û
>W2010595114
JABERL010000008
Gammaproteobacteria
Acinetobacter sp. ANC 5380 [JABERL]
24270
24345
+
Lys
CTT
[ENA]
¡û
>W2011608109
SJNU01000002
Gammaproteobacteria
Acinetobacter sp. ANC 4779 [SJNU]
210127
210202
+
Lys
CTT
[ENA]
¡û
>W2011608376
SJNY01000004
Gammaproteobacteria
Acinetobacter sp. ANC 4472 [SJNY]
205261
205336
+
Lys
CTT
[ENA]
¡û
>W2011608434
SJNZ01000002
Gammaproteobacteria
Acinetobacter sp. ANC 4471 [SJNZ]
163291
163366
+
Lys
CTT
[ENA]
¡û
>W2011608619
SJOB01000017
Gammaproteobacteria
Acinetobacter sp. ANC 4249 [SJOB]
63414
63489
+
Lys
CTT
[ENA]
¡û
>W2011608645
SJOC01000002
Gammaproteobacteria
Acinetobacter sp. ANC 4216 [SJOC]
82465
82540
+
Lys
CTT
[ENA]
¡û
>W2011609025
SJOH01000010
Gammaproteobacteria
Acinetobacter sp. ANC 3781 [SJOH]
106309
106384
+
Lys
CTT
[ENA]
¡û
>W2011615393
SJXH01000005
Gammaproteobacteria
Acinetobacter sp. ANC 4862 [SJXH]
30081
30156
+
Lys
CTT
[ENA]
¡û
>W2012111215
VOYK01000034
Gammaproteobacteria
Acinetobacter sp. YH01016 [VOYK]
24255
24330
+
Lys
CTT
[ENA]
¡û
>W2012111281
VOYL01000035
Gammaproteobacteria
Acinetobacter sp. YH01018 [VOYL]
24255
24330
+
Lys
CTT
[ENA]
¡û
>W2012111524
VOYP01000002
Gammaproteobacteria
Acinetobacter sp. YH01022 [VOYP]
157156
157081
-
Lys
CTT
[ENA]
¡û
>W2012118946
VPCP01000001
Gammaproteobacteria
Acinetobacter sp. YH12201 [VPCP]
30140
30215
+
Lys
CTT
[ENA]
¡û
>W2012122137
VPEH01000020
Gammaproteobacteria
Acinetobacter sp. YH16039 [VPEH]
25955
25880
-
Lys
CTT
[ENA]
¡û
>W2012217225
VZOD01000002
Gammaproteobacteria
Acinetobacter bohemicus CCUG 69707 [VZOD]
72522
72447
-
Lys
CTT
[ENA]
¡û
>W2012509474
WXXM01000006
Gammaproteobacteria
Acinetobacter sp. SA01 [WXXM]
30132
30207
+
Lys
CTT
[ENA]
¡û
>W2110113690
CAJJDZ010000002
Gammaproteobacteria
Acinetobacter bohemicus QAC-21b [CAJJDZ]
487495
487570
+
Lys
CTT
[ENA]
¡û
>C201227901
CP049801
Gammaproteobacteria
Acinetobacter sp. 323-1 [CP049801]
3096201
3096276
+
Lys
CTT
-
¡û
>C211234864
CP067019
Gammaproteobacteria
Acinetobacter sp. CS-2 [CP067019]
438295
438220
-
Lys
CTT
-
¡û
>C231205261
CP085284
Gammaproteobacteria
Acinetobacter haemolyticus w12 [CP085284]
2737205
2737280
+
Lys
CTT
-
¡û
>C241139037
CP049916
Gammaproteobacteria
Acinetobacter lanii 185 [CP049916]
2964470
2964545
+
Lys
CTT
-
¡û
>W1610923298
LSZG01000001
Gammaproteobacteria
Acinetobacter terrae SFC [LSZG]
227078
227153
+
Lys
CTT
[ENA]
¡û
>W1610923391
LSZH01000011
Gammaproteobacteria
Acinetobacter sp. SFB [LSZH]
370393
370318
-
Lys
CTT
[ENA]
¡û
>W1710531217
FNPK01000001
Gammaproteobacteria
Acinetobacter kyonggiensis [FNPK]
217480
217555
+
Lys
CTT
[ENA]
¡û
>W1710576112
FOZU01000002
Gammaproteobacteria
Acinetobacter bohemicus [FOZU]
213385
213460
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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