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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.315976 (21 seq.)
>w013551
AANO01000001
Cyanobacteriota
Synechococcus sp. WH 5701 [AANO]
147761
147838
+
Met
CAT
[ENA]
¡û
>WENV180114641
OAPS01027727
[OAPS] marine metagenome; sea water
569
495
-
Ile2
CAT
[ENA]
¡û
>WENV180360210
OBNT01021989
[OBNT] marine metagenome; Sea Water
253
326
+
Ile2
CAT
[ENA]
¡û
>WENV181369709
OFQP01025527
[OFQP] freshwater metagenome; Freshwater Lake
363
289
-
Ile2
CAT
[ENA]
¡û
>W08011039
ABSE01000013
Cyanobacteriota
Cyanobium sp. PCC 7001 [ABSE]
241618
241545
-
Met
CAT
[ENA]
¡û
>W1911176883
NQKW01000011
Cyanobacteriota
Synechococcus sp. 1G10 [NQKW]
29710
29638
-
Met
CAT
[ENA]
¡û
>W2011032370
NQKW01000011
Cyanobacteriota
Synechococcus sp. 1G10 [NQKW]
29710
29638
-
Ile2
CAT
[ENA]
¡û
>W2012098925
VNWP01000001
Cyanobacteriota
Synechococcus sp. BSA11S [VNWP]
56379
56451
+
Ile2
CAT
[ENA]
¡û
>ENV09000974
ABSQ01006818
Freshwater sediment metagenome lwMethenol_C1
92
167
+
Met
CAT
[ENA]
¡û
>W2110311331
JADEWM010000005
Cyanobacteriota
Cyanobium sp. LEGE 06113 [JADEWM]
261549
261621
+
Ile2
CAT
[ENA]
¡û
>W2110641608
JAHRXJ010000011
Cyanobacteriota
Synechococcus sp. HK05 [JAHRXJ]
69147
69075
-
Ile2
CAT
[ENA]
¡û
>C211072588
CP047940
Cyanobacteriota
Cyanobium sp. NS01 [CP047940]
2449716
2449644
-
Ile2
CAT
-
¡û
>C211132917
CP060397
Cyanobacteriota
Synechococcus sp. CBW1004 [CP060397]
1794414
1794486
+
Ile2
CAT
-
¡û
>C211132960
CP060398
Cyanobacteriota
Synechococcus sp. CBW1002 [CP060398]
1059374
1059448
+
Ile2
CAT
-
¡û
>C211195298
CP064908
Cyanobacteriota
Synechococcus sp. CBW1107 [CP064908]
1835254
1835328
+
Ile2
CAT
-
¡û
>C211324849
CP073761
Cyanobacteriota
Cyanobium sp. M30B3 [CP073761]
2938452
2938380
-
Ile2
CAT
-
¡û
>C231285902
CP090898
Cyanobacteriota
Synechococcus sp. NB0720_010 [CP090898]
1332381
1332307
-
Ile2
CAT
-
¡û
>C231365442
CP096032
Cyanobacteriota
Synechococcus sp. A10-1-5-1 [CP096032]
1315561
1315488
-
Ile2
CAT
-
¡û
>W10120560
ADXL01000087
Cyanobacteriota
Synechococcus sp. CB0101 [ADXL]
5753
5679
-
Met
CAT
[ENA]
¡û
>W11127304
ADXL01000087
Cyanobacteriota
Synechococcus sp. CB0101 [ADXL]
5753
5679
-
Met
CAT
[ENA]
¡û
>W11127315
ADXM01000022
Cyanobacteriota
Synechococcus sp. CB0205 [ADXM]
99113
99187
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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