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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.316080 (57 seq.)
>W1710863473
LMFD01000012
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
206449
206525
+
Asp
GTC
[ENA]
¡û
>W1710863474
LMFD01000012
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
206604
206680
+
Asp
GTC
[ENA]
¡û
>W1710864164
LMFQ01000025
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
164781
164705
-
Asp
GTC
[ENA]
¡û
>W1710864165
LMFQ01000025
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
164626
164550
-
Asp
GTC
[ENA]
¡û
>W1710864466
LMFX01000001
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
88841
88765
-
Asp
GTC
[ENA]
¡û
>W1710864467
LMFX01000001
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
88687
88611
-
Asp
GTC
[ENA]
¡û
>W1710865962
LMHC01000002
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
186743
186667
-
Asp
GTC
[ENA]
¡û
>W1710865963
LMHC01000002
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
186590
186514
-
Asp
GTC
[ENA]
¡û
>W131226668
AUEO01000002
Alphaproteobacteria
Caulobacter sp. URHA0033 [AUEO]
66974
67050
+
Asp
GTC
[ENA]
¡û
>W131226669
AUEO01000002
Alphaproteobacteria
Caulobacter sp. URHA0033 [AUEO]
67129
67205
+
Asp
GTC
[ENA]
¡û
>WENV180015693
FSSW01000039
[FSSW] metagenome; soil
139
215
+
Asp
GTC
[ENA]
¡û
>WENV180017331
FSWT01000447
[FSWT] metagenome; soil
934
1010
+
Asp
GTC
[ENA]
¡û
>WENV180017428
FSWZ01000304
[FSWZ] metagenome; soil
2442
2366
-
Asp
GTC
[ENA]
¡û
>WENV180018742
FTAI01000653
[FTAI] metagenome; soil
1704
1780
+
Asp
GTC
[ENA]
¡û
>WENV180033739
FTKL01067885
[FTKL] metagenome; soil
916
992
+
Asp
GTC
[ENA]
¡û
>WENV180034116
FTKM01680087
[FTKM] metagenome; soil
204252
204328
+
Asp
GTC
[ENA]
¡û
>WENV183697987
OUNK010648796
[OUNK] metagenome; soil
572
648
+
Asp
GTC
[ENA]
¡û
>W141779491
JONW01000007
Alphaproteobacteria
Caulobacter sp. UNC358MFTsu5.1 [JONW]
478490
478414
-
Asp
GTC
[ENA]
¡û
>W141779492
JONW01000007
Alphaproteobacteria
Caulobacter sp. UNC358MFTsu5.1 [JONW]
478336
478260
-
Asp
GTC
[ENA]
¡û
>W141815966
JQJN01000011
Alphaproteobacteria
Caulobacter henricii [JQJN]
64882
64806
-
Asp
GTC
[ENA]
¡û
>W141815967
JQJN01000011
Alphaproteobacteria
Caulobacter henricii [JQJN]
64728
64652
-
Asp
GTC
[ENA]
¡û
>W141816058
JQJP01000009
Alphaproteobacteria
Caulobacter henricii [JQJP]
136964
136888
-
Asp
GTC
[ENA]
¡û
>W141816059
JQJP01000009
Alphaproteobacteria
Caulobacter henricii [JQJP]
136810
136734
-
Asp
GTC
[ENA]
¡û
>WENV025097
AACY020861024
Marine microbial communities from Global Ocean Sampling (GOS)
654
576
-
Asp
GTC
[ENA]
>W1810073502
PEGG01000016
Alphaproteobacteria
Caulobacter sp. B11 [PEGG]
15456
15380
-
Asp
GTC
[ENA]
¡û
>W1810073503
PEGG01000016
Alphaproteobacteria
Caulobacter sp. B11 [PEGG]
15305
15229
-
Asp
GTC
[ENA]
¡û
>W1810474476
QAII01000048
Alphaproteobacteria
Caulobacter sp. HMWF025 [QAII]
34154
34078
-
Asp
GTC
[ENA]
¡û
>W1810474477
QAII01000048
Alphaproteobacteria
Caulobacter sp. HMWF025 [QAII]
34009
33933
-
Asp
GTC
[ENA]
¡û
>W1810474993
QAIR01000021
Alphaproteobacteria
Caulobacter sp. HMWF009 [QAIR]
27546
27470
-
Asp
GTC
[ENA]
¡û
>W1810474994
QAIR01000021
Alphaproteobacteria
Caulobacter sp. HMWF009 [QAIR]
27401
27325
-
Asp
GTC
[ENA]
¡û
>W1810594025
QFYP01000001
Alphaproteobacteria
Phenylobacterium hankyongense HKS-05 [QFYP]
3182230
3182154
-
Asp
GTC
[ENA]
¡û
>W2011626129
SLZL01000002
Alphaproteobacteria
Caulobacter sp. BK020 [SLZL]
116186
116110
-
Asp
GTC
[ENA]
¡û
>W2011626130
SLZL01000002
Alphaproteobacteria
Caulobacter sp. BK020 [SLZL]
116031
115955
-
Asp
GTC
[ENA]
¡û
>W2012047484
VIVU01000003
Alphaproteobacteria
Caulobacter henricii 536 [VIVU]
148993
149069
+
Asp
GTC
[ENA]
¡û
>W2012047485
VIVU01000003
Alphaproteobacteria
Caulobacter henricii 536 [VIVU]
149147
149223
+
Asp
GTC
[ENA]
¡û
>W2012048360
VIWK01000003
Alphaproteobacteria
Caulobacter rhizosphaerae 3260 [VIWK]
148974
149050
+
Asp
GTC
[ENA]
¡û
>W2012048361
VIWK01000003
Alphaproteobacteria
Caulobacter rhizosphaerae 3260 [VIWK]
149128
149204
+
Asp
GTC
[ENA]
¡û
>C211318282
CP073078
Alphaproteobacteria
Caulobacter sp. S6 [CP073078]
190281
190205
-
Asp
GTC
-
¡û
>C241131712
CP048815
Alphaproteobacteria
Caulobacter rhizosphaerae KCTC 52515 [CP048815]
3188083
3188159
+
Asp
GTC
-
¡û
>C241131713
CP048815
Alphaproteobacteria
Caulobacter rhizosphaerae KCTC 52515 [CP048815]
3188237
3188313
+
Asp
GTC
-
¡û
>W2310010493
BMLD01000006
Alphaproteobacteria
Caulobacter rhizosphaerae CGMCC 1.15915 [BMLD]
284515
284439
-
Asp
GTC
[ENA]
¡û
>W2310010494
BMLD01000006
Alphaproteobacteria
Caulobacter rhizosphaerae CGMCC 1.15915 [BMLD]
284361
284285
-
Asp
GTC
[ENA]
¡û
>W1510639827
CVJQ01000001
Alphaproteobacteria
Phenylobacterium immobile [ATCC 35973] [CVJQ]
2006062
2006138
+
Asp
GTC
[ENA]
¡û
>C161049374
CP013002
Alphaproteobacteria
Caulobacter henricii CB4 [CP013002]
1827786
1827710
-
Asp
GTC
[Ensembl]
¡û
>C161049375
CP013002
Alphaproteobacteria
Caulobacter henricii CB4 [CP013002]
1827635
1827559
-
Asp
GTC
[Ensembl]
¡û
>W121086789
AKKF01000298
Alphaproteobacteria
Caulobacter sp. AP07 [AKKF]
49493
49569
+
Asp
GTC
[ENA]
¡û
>W121086794
AKKF01000322
Alphaproteobacteria
Caulobacter sp. AP07 [AKKF]
98
174
+
Asp
GTC
[ENA]
¡û
>W1610725819
LMFD01000012
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
206449
206525
+
Asp
GTC
[ENA]
¡û
>W1610725820
LMFD01000012
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
206604
206680
+
Asp
GTC
[ENA]
¡û
>W1610726510
LMFQ01000025
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
164781
164705
-
Asp
GTC
[ENA]
¡û
>W1610726511
LMFQ01000025
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
164626
164550
-
Asp
GTC
[ENA]
¡û
>W1610726812
LMFX01000001
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
88841
88765
-
Asp
GTC
[ENA]
¡û
>W1610726813
LMFX01000001
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
88687
88611
-
Asp
GTC
[ENA]
¡û
>W1610728308
LMHC01000002
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
186743
186667
-
Asp
GTC
[ENA]
¡û
>W1610728309
LMHC01000002
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
186590
186514
-
Asp
GTC
[ENA]
¡û
>W1710565851
FORN01000032
Alphaproteobacteria
Caulobacter sp. UNC279MFTsu5.1 [FORN]
92
16
-
Asp
GTC
[ENA]
¡û
>W1710565875
FORN01000080
Alphaproteobacteria
Caulobacter sp. UNC279MFTsu5.1 [FORN]
12819
12743
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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