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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.316176 (81 seq.)
>C006269
CP000382
Bacillota
Clostridium novyi NT [CP000382]
2100020
2099945
-
Lys
CTT
[Ensembl]
¡û
>C006277
CP000382
Bacillota
Clostridium novyi NT [CP000382]
2099347
2099272
-
Lys
CTT
[Ensembl]
¡û
>C007160
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
625217
625142
-
Lys
CTT
[Ensembl]
¡û
>W08001227
ABDQ01000002
Bacillota
Clostridium botulinum C str. Eklund [ABDQ]
291140
291215
+
Lys
CTT
[ENA]
¡û
>W08001235
ABDQ01000002
Bacillota
Clostridium botulinum C str. Eklund [ABDQ]
291809
291884
+
Lys
CTT
[ENA]
¡û
>W141427482
JENL01000003
Bacillota
Clostridium novyi A str. 4540 [JENL]
47374
47299
-
Lys
CTT
[ENA]
¡û
>W141427490
JENL01000003
Bacillota
Clostridium novyi A str. 4540 [JENL]
46702
46627
-
Lys
CTT
[ENA]
¡û
>W141427758
JENP01000007
Bacillota
Clostridium botulinum C/D str. BKT12695 [JENP]
18594
18519
-
Lys
CTT
[ENA]
¡û
>W141427766
JENP01000007
Bacillota
Clostridium botulinum C/D str. BKT12695 [JENP]
17925
17850
-
Lys
CTT
[ENA]
¡û
>W141427912
JENR01000035
Bacillota
Clostridium botulinum D str. 16868 [JENR]
58614
58689
+
Lys
CTT
[ENA]
¡û
>W141427920
JENR01000035
Bacillota
Clostridium botulinum D str. 16868 [JENR]
59280
59355
+
Lys
CTT
[ENA]
¡û
>W141428002
JENS01000088
Bacillota
Clostridium botulinum C/D str. BKT75002 [JENS]
578
653
+
Lys
CTT
[ENA]
¡û
>W141428006
JENS01000088
Bacillota
Clostridium botulinum C/D str. BKT75002 [JENS]
916
991
+
Lys
CTT
[ENA]
¡û
>W141428047
JENT01000027
Bacillota
Clostridium botulinum C/D str. BKT2873 [JENT]
303
228
-
Lys
CTT
[ENA]
¡û
>W141428105
JENT01000123
Bacillota
Clostridium botulinum C/D str. BKT2873 [JENT]
64249
64174
-
Lys
CTT
[ENA]
¡û
>W141428109
JENT01000123
Bacillota
Clostridium botulinum C/D str. BKT2873 [JENT]
63911
63836
-
Lys
CTT
[ENA]
¡û
>W141428228
JENV01000006
Bacillota
Clostridium novyi B str. NCTC 9691 [JENV]
206
281
+
Lys
CTT
[ENA]
¡û
>W141428236
JENV01000006
Bacillota
Clostridium novyi B str. NCTC 9691 [JENV]
873
948
+
Lys
CTT
[ENA]
¡û
>W141428265
JENV01000026
Bacillota
Clostridium novyi B str. NCTC 9691 [JENV]
56133
56208
+
Lys
CTT
[ENA]
¡û
>W141428338
JENW01000043
Bacillota
Clostridium novyi B str. ATCC 27606 [JENW]
887
812
-
Lys
CTT
[ENA]
¡û
>W141428342
JENW01000043
Bacillota
Clostridium novyi B str. ATCC 27606 [JENW]
548
473
-
Lys
CTT
[ENA]
¡û
>W141428348
JENW01000053
Bacillota
Clostridium novyi B str. ATCC 27606 [JENW]
52649
52574
-
Lys
CTT
[ENA]
¡û
>W141428352
JENW01000053
Bacillota
Clostridium novyi B str. ATCC 27606 [JENW]
52310
52235
-
Lys
CTT
[ENA]
¡û
>W141428371
JENW01000102
Bacillota
Clostridium novyi B str. ATCC 27606 [JENW]
321
246
-
Lys
CTT
[ENA]
¡û
>W141428463
JENX01000105
Bacillota
Clostridium haemolyticum NCTC 9693 [JENX]
474
549
+
Lys
CTT
[ENA]
¡û
>WENV170555591
CXWL01001272
[CXWL] groundwater metagenome; biofilm material
32535
32609
+
Lys
CTT
[ENA]
¡û
>WENV170969388
MTKW01027408
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
605
680
+
Lys
CTT
[ENA]
¡û
>C191063927
CP029458
Bacillota
Clostridium novyi 150557 [CP029458]
1207143
1207218
+
Lys
CTT
-
¡û
>W09100448
AABG04000007
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
2618
2543
-
Lys
CTT
[ENA]
¡û
>W09135665
ACVX01000018
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
69380
69305
-
Lys
CTT
[ENA]
¡û
>W1910483287
FXLO01000008
Bacillota
Clostridium massiliodielmoense MT26 [FXLO]
365693
365768
+
Lys
CTT
[ENA]
¡û
>W1911496658
OCMV01000002
Bacillota
Hungateiclostridium thermocellum LQRI [OCMV]
2019113
2019038
-
Lys
CTT
[ENA]
¡û
>W2010411136
FXLO01000008
Bacillota
Clostridium massiliodielmoense MT26 [FXLO]
365693
365768
+
Lys
CTT
[ENA]
¡û
>W2011157562
OCMV01000002
Bacillota
Hungateiclostridium thermocellum LQRI [OCMV]
2019113
2019038
-
Lys
CTT
[ENA]
¡û
>W2011530330
SBHL01000056
Bacillota
Hungateiclostridium thermocellum PAL5 [SBHL]
350
425
+
Lys
CTT
[ENA]
¡û
>W2011707343
SWMZ01000018
Bacillota
Clostridium botulinum IFR 18/057 [SWMZ]
32112
32187
+
Lys
CTT
[ENA]
¡û
>W2011707351
SWMZ01000018
Bacillota
Clostridium botulinum IFR 18/057 [SWMZ]
32778
32853
+
Lys
CTT
[ENA]
¡û
>W2011708709
SWNQ01000008
Bacillota
Clostridium botulinum IFR 18/051 [SWNQ]
5902
5977
+
Lys
CTT
[ENA]
¡û
>W2011708717
SWNQ01000008
Bacillota
Clostridium botulinum IFR 18/051 [SWNQ]
6568
6643
+
Lys
CTT
[ENA]
¡û
>W2011708887
SWNS01000014
Bacillota
Clostridium botulinum Colworth BL165 [SWNS]
151
76
-
Lys
CTT
[ENA]
¡û
>W2011708915
SWNS01000051
Bacillota
Clostridium botulinum Colworth BL165 [SWNS]
40
115
+
Lys
CTT
[ENA]
¡û
>W2011709001
SWNT01000043
Bacillota
Clostridium botulinum IFR 18/049 [SWNT]
474
549
+
Lys
CTT
[ENA]
¡û
>W2011709005
SWNT01000050
Bacillota
Clostridium botulinum IFR 18/049 [SWNT]
321
246
-
Lys
CTT
[ENA]
¡û
>W2011722033
SWUH01000030
Bacillota
Clostridium botulinum IFR 18/017 [SWUH]
24246
24171
-
Lys
CTT
[ENA]
¡û
>W2011722041
SWUH01000030
Bacillota
Clostridium botulinum IFR 18/017 [SWUH]
23580
23505
-
Lys
CTT
[ENA]
¡û
>W2011726573
SWWN01000009
Bacillota
Clostridium botulinum IFR 18/048 [SWWN]
62222
62147
-
Lys
CTT
[ENA]
¡û
>W2011726577
SWWN01000009
Bacillota
Clostridium botulinum IFR 18/048 [SWWN]
61873
61798
-
Lys
CTT
[ENA]
¡û
>W2011740583
SXDK01000020
Bacillota
Clostridium botulinum 7221C [SXDK]
46257
46332
+
Lys
CTT
[ENA]
¡û
>W2011740619
SXDK01000056
Bacillota
Clostridium botulinum 7221C [SXDK]
82
157
+
Lys
CTT
[ENA]
¡û
>W2011740663
SXDL01000019
Bacillota
Clostridium botulinum IFR 18/096 [SXDL]
24635
24560
-
Lys
CTT
[ENA]
¡û
>W2011740671
SXDL01000019
Bacillota
Clostridium botulinum IFR 18/096 [SXDL]
23969
23894
-
Lys
CTT
[ENA]
¡û
>W2011741921
SXEB01000113
Bacillota
Clostridium botulinum Chicken liver [SXEB]
246
321
+
Lys
CTT
[ENA]
¡û
>W2011741942
SXEB01000146
Bacillota
Clostridium botulinum Chicken liver [SXEB]
51
126
+
Lys
CTT
[ENA]
¡û
>W2011742339
SXEH01000002
Bacillota
Clostridium botulinum IFR 18/082 [SXEH]
63537
63462
-
Lys
CTT
[ENA]
¡û
>W2011742347
SXEH01000002
Bacillota
Clostridium botulinum IFR 18/082 [SXEH]
62871
62796
-
Lys
CTT
[ENA]
¡û
>W2110130924
CAJVGB010000061
Bacillota
Clostridium haemolyticum [CAJVGB]
11534
11459
-
Lys
CTT
[ENA]
¡û
>W2110130932
CAJVGB010000061
Bacillota
Clostridium haemolyticum [CAJVGB]
10867
10792
-
Lys
CTT
[ENA]
¡û
>C211180735
CP063816
Bacillota
Clostridium botulinum Stockholm [CP063816]
364092
364167
+
Lys
CTT
-
¡û
>C211180838
CP063822
Bacillota
Clostridium botulinum 1873 [CP063822]
1743062
1742987
-
Lys
CTT
-
¡û
>C211180846
CP063822
Bacillota
Clostridium botulinum 1873 [CP063822]
1742395
1742320
-
Lys
CTT
-
¡û
>C211185251
CP063959
Bacillota
Clostridium botulinum 3859/11 [CP063959]
420252
420327
+
Lys
CTT
-
¡û
>C211185259
CP063959
Bacillota
Clostridium botulinum 3859/11 [CP063959]
420918
420993
+
Lys
CTT
-
¡û
>C211185338
CP063965
Bacillota
Clostridium botulinum BKT2873 [CP063965]
417949
418024
+
Lys
CTT
-
¡û
>C211185346
CP063965
Bacillota
Clostridium botulinum BKT2873 [CP063965]
418615
418690
+
Lys
CTT
-
¡û
>C231486249
CP104195
Bacillota
Acetivibrio thermocellus M3 [CP104195]
2079704
2079779
+
Lys
CTT
-
¡û
>C11104938
CP002410
Bacillota
Clostridium botulinum BKT015925 [CP002410]
2352115
2352040
-
Lys
CTT
[Ensembl]
¡û
>C11104946
CP002410
Bacillota
Clostridium botulinum BKT015925 [CP002410]
2351449
2351374
-
Lys
CTT
[Ensembl]
¡û
>W1510882110
JDRX01000009
Bacillota
Clostridium novyi A str. 4570 [JDRX]
76
1
-
Lys
CTT
[ENA]
¡û
>W1510882161
JDRY01000027
Bacillota
Clostridium botulinum C/D str. DC5 [JDRY]
35258
35333
+
Lys
CTT
[ENA]
¡û
>W1510882169
JDRY01000027
Bacillota
Clostridium botulinum C/D str. DC5 [JDRY]
35924
35999
+
Lys
CTT
[ENA]
¡û
>W1510882269
JDRZ01000031
Bacillota
Clostridium botulinum D str. CCUG 7971 [JDRZ]
554
479
-
Lys
CTT
[ENA]
¡û
>W1510882273
JDRZ01000031
Bacillota
Clostridium botulinum D str. CCUG 7971 [JDRZ]
216
141
-
Lys
CTT
[ENA]
¡û
>W1510882364
JDSA01000191
Bacillota
Clostridium haemolyticum NCTC 8350 [JDSA]
474
549
+
Lys
CTT
[ENA]
¡û
>W11146153
AESB01000097
Bacillota
Clostridium botulinum BKT028387 [AESB]
5777
5852
+
Lys
CTT
[ENA]
¡û
>W11146193
AESC01000013
Bacillota
Clostridium botulinum V891 [AESC]
31991
32066
+
Lys
CTT
[ENA]
¡û
>W11146201
AESC01000013
Bacillota
Clostridium botulinum V891 [AESC]
32657
32732
+
Lys
CTT
[ENA]
¡û
>C161097538
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
2010930
2011005
+
Lys
CTT
-
¡û
>W121061354
AJGT01000018
Bacillota
Acetivibrio thermocellus YS [AJGT]
338
413
+
Lys
CTT
[ENA]
¡û
>W1610948036
LVAS01000063
Bacillota
Clostridiales bacterium Firm_13 [LVAS]
62448
62523
+
Lys
CTT
[ENA]
¡û
>W1710561817
FOOL01000001
Bacillota
Clostridium homopropionicum [FOOL]
337317
337392
+
Lys
CTT
[ENA]
¡û
>W1710754888
LHYQ01000008
Bacillota
Clostridium botulinum [LHYQ]
5909
5984
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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