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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.31619 (39 seq.)
>W1711792395
MWJQ01000004
Betaproteobacteria
Burkholderia sp. A27 [MWJQ]
374353
374264
-
Ser
CGA
[ENA]
¡û
>W1712077263
NGUT01000022
Betaproteobacteria
Paraburkholderia caledonica [NGUT]
93698
93609
-
Ser
CGA
[ENA]
¡û
>W1712081810
NHOM01000001
Betaproteobacteria
Burkholderia sp. Bk [NHOM]
104784
104695
-
Ser
CGA
[ENA]
¡û
>W131184552
ARSZ01000033
Betaproteobacteria
Paraburkholderia caledonica 376MFSha3.1 [ARSZ]
197556
197645
+
Ser
CGA
[ENA]
¡û
>W131202926
ASXI01000162
Betaproteobacteria
Paraburkholderia phenoliruptrix AC1100 [ASXI]
15805
15716
-
Ser
CGA
[ENA]
¡û
>W131218579
ATXV01000027
Betaproteobacteria
Burkholderia sp. URHA0054 [ATXV]
15145
15234
+
Ser
CGA
[ENA]
¡û
>W141149715
AWZT01000008
Betaproteobacteria
Paraburkholderia dilworthii [AWZT]
99610
99699
+
Ser
CGA
[ENA]
¡û
>W141149782
AWZV01000004
Betaproteobacteria
Burkholderia sp. WSM2232 [AWZV]
275362
275451
+
Ser
CGA
[ENA]
¡û
>W141150406
AXAJ01000004
Betaproteobacteria
Burkholderia sp. WSM2230 [AXAJ]
322853
322764
-
Ser
CGA
[ENA]
¡û
>W08008485
ABLD01000004
Betaproteobacteria
Paraburkholderia graminis C4D1M [ABLD]
312420
312334
-
Ser
CGA
[ENA]
¡û
>W141219883
AZXJ01000005
Betaproteobacteria
Burkholderia sp. JPY366 [AZXJ]
122263
122352
+
Ser
CGA
[ENA]
¡û
>W141235564
BAYE01000001
Betaproteobacteria
Paraburkholderia caledonica NBRC 102488 [BAYE]
668317
668228
-
Ser
CGA
[ENA]
¡û
>WENV170009540
APMI01000621
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
13765
13854
+
Ser
CGA
[ENA]
¢þ
>WENV170010132
APMI01009418
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2030
1941
-
Ser
CGA
[ENA]
¢þ
>WENV170010594
APMI01021806
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1751
1662
-
Ser
CGA
[ENA]
¢þ
>WENV170010702
APMI01025708
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
12080
11991
-
Ser
CGA
[ENA]
¢þ
>C181108242
CP024905
Betaproteobacteria
Paraburkholderia caledonica PHRS4 [CP024905, CP024906]
956213
956302
+
Ser
CGA
-
¡û
>C181108986
CP024934
Betaproteobacteria
Paraburkholderia graminis PHS1 [CP024934, CP024935]
951036
951125
+
Ser
CGA
-
¡û
>C181109113
CP024941
Betaproteobacteria
Paraburkholderia terricola mHS1 [CP024941, CP024942]
901831
901920
+
Ser
CGA
-
¡û
>W1910183542
BJNV01000007
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
159270
159359
+
Ser
CGA
[ENA]
¡û
>W1910822047
MWMK01000014
Betaproteobacteria
Paraburkholderia strydomiana WK1.1f [MWMK]
18380
18291
-
Ser
CGA
[ENA]
¡û
>W1810477166
QAOP01000003
Betaproteobacteria
Paraburkholderia sp. GV072 [QAOP]
97575
97486
-
Ser
CGA
[ENA]
¡û
>W1810513929
QBUB01000003
Betaproteobacteria
Paraburkholderia sp. GV068 [QBUB]
97575
97486
-
Ser
CGA
[ENA]
¡û
>W1810628670
QICR01000001
Betaproteobacteria
Paraburkholderia sp. OV446 [QICR]
436386
436475
+
Ser
CGA
[ENA]
¡û
>W1810676577
QKMC01000003
Betaproteobacteria
Paraburkholderia sp. GV052 [QKMC]
97575
97486
-
Ser
CGA
[ENA]
¡û
>C151004800
CP003863
Betaproteobacteria
Paraburkholderia phenoliruptrix BR3459a [CP003863, CP003864]
965823
965912
+
Ser
CGA
[Ensembl]
¡û
>C151092437
CP012192
Betaproteobacteria
Burkholderia sp. HB1 [CP012192, CP012193]
918513
918602
+
Ser
CGA
-
¡û
>W10111439
ADDJ01000011
Betaproteobacteria
Burkholderia sp. CCGE1001 [ADDJ]
76569
76658
+
Ser
CGA
[ENA]
¡û
>W10115256
ADJP01000008
Betaproteobacteria
Burkholderia sp. CCGE1003 [ADJP]
214763
214852
+
Ser
CGA
[ENA]
¡û
>C11104275
CP002519
Betaproteobacteria
Burkholderia sp. CCGE1001 [CP002519]
896444
896533
+
Ser
CGA
[Ensembl]
¡û
>C11104337
CP002217
Betaproteobacteria
Burkholderia sp. CCGE1003 [CP002217]
1027625
1027714
+
Ser
CGA
[Ensembl]
¡û
>W11114382
ADDJ01000011
Betaproteobacteria
Burkholderia sp. CCGE1001 [ADDJ]
76569
76658
+
Ser
CGA
[ENA]
¡û
>W11118842
ADJP01000008
Betaproteobacteria
Burkholderia sp. CCGE1003 [ADJP]
214763
214852
+
Ser
CGA
[ENA]
¡û
>W1610538128
JRTU01000633
Betaproteobacteria
Paraburkholderia kirstenboschensis [JRTU]
1137
1048
-
Ser
CGA
[ENA]
¡û
>W1610538815
JRZC01000091
Betaproteobacteria
Paraburkholderia kirstenboschensis [JRZC]
3213
3302
+
Ser
CGA
[ENA]
¡û
>W1710524535
FNIU01000027
Betaproteobacteria
Paraburkholderia sediminicola [FNIU]
24296
24385
+
Ser
CGA
[ENA]
¡û
>W1710589337
FRAB01000027
Betaproteobacteria
Paraburkholderia terricola [FRAB]
66616
66527
-
Ser
CGA
[ENA]
¡û
>W1710640597
JRTU01000633
Betaproteobacteria
Paraburkholderia kirstenboschensis [JRTU]
1137
1048
-
Ser
CGA
[ENA]
¡û
>W1710641722
JRZC01000091
Betaproteobacteria
Paraburkholderia kirstenboschensis [JRZC]
3213
3302
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK