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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.316693 (27 seq.)
>W1711096472
LTHT01000301
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
115
40
-
Lys
CTT
[ENA]
¡û
>WENV181439004
OGDL01000028
[OGDL] metagenome; Human gut stool
41948
41873
-
Lys
CTT
[ENA]
¢þ
>WENV181446212
OGDT01000099
[OGDT] metagenome; Human gut stool
20929
20854
-
Lys
CTT
[ENA]
¢þ
>WENV181455571
OGEF01005160
[OGEF] metagenome; Human gut stool
136
61
-
Lys
CTT
[ENA]
¢þ
>WENV181475441
OGFE01000237
[OGFE] metagenome; Human gut stool
17962
18037
+
Lys
CTT
[ENA]
¢þ
>WENV181483996
OGFL01000177
[OGFL] metagenome; Human gut stool
27480
27555
+
Lys
CTT
[ENA]
¢þ
>WENV181498416
OGGF01001885
[OGGF] metagenome; Human gut stool
3356
3431
+
Lys
CTT
[ENA]
¢þ
>WENV181551031
OGIN01000463
[OGIN] metagenome; Human gut stool
12427
12352
-
Lys
CTT
[ENA]
¢þ
>WENV181820591
OGUD01000138
[OGUD] metagenome; Human gut stool
41950
41875
-
Lys
CTT
[ENA]
¢þ
>WENV181946815
OGZD01000220
[OGZD] human gut metagenome; faeces
27866
27941
+
Lys
CTT
[ENA]
¢þ
>WENV181947947
OGZE01000068
[OGZE] human gut metagenome; faeces
50622
50697
+
Lys
CTT
[ENA]
¢þ
>WENV182173532
OHNB01001178
[OHNB] human gut metagenome; feces
5
80
+
Lys
CTT
[ENA]
¢þ
>WENV182975111
OKXT01003523
[OKXT] human gut metagenome; human gut
57
132
+
Lys
CTT
[ENA]
¢þ
>WENV183501939
OMGS01018426
[OMGS] human gut metagenome; human gut
686
761
+
Lys
CTT
[ENA]
¢þ
>WENV183576925
OOCJ01002882
[OOCJ] human gut metagenome; human gut
2442
2517
+
Lys
CTT
[ENA]
¢þ
>C181003912
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
1191575
1191650
+
Lys
CTT
-
¡û
>C181160974
CP028102
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [CP028102]
2683
2608
-
Lys
CTT
-
¡û
>C181160997
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
2225916
2225991
+
Lys
CTT
-
¡û
>C191210242
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
1904844
1904769
-
Lys
CTT
-
¡û
>C191219300
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
2001933
2001858
-
Lys
CTT
-
¡û
>W09118508
ACDB01000024
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [ACDB]
31313
31388
+
Lys
CTT
[ENA]
¡û
>W09125186
ACIE01000078
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
36159
36234
+
Lys
CTT
[ENA]
¡û
>W1810790029
QRHI01000011
Fusobacteriota
Fusobacterium mortiferum AM25-18LB [QRHI]
32720
32795
+
Lys
CTT
[ENA]
¡û
>W1810790187
QRHL01000025
Fusobacteriota
Fusobacterium mortiferum AM25-1 [QRHL]
122
47
-
Lys
CTT
[ENA]
¡û
>W1810791374
QRIG01000040
Fusobacteriota
Fusobacterium varium AM22-17 [QRIG]
134
59
-
Lys
CTT
[ENA]
¡û
>W1810832216
QSOW01000010
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
93721
93796
+
Lys
CTT
[ENA]
¡û
>W1810839567
QSTZ01000013
Fusobacteriota
Fusobacterium mortiferum OM06-15BH [QSTZ]
33271
33346
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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