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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.316726 (51 seq.)
>W1711081902
LSTE01000083
Gammaproteobacteria
Gammaproteobacteria bacterium SCGC AG-212-F23 [LSTE]
386
461
+
Glu
TTC
[ENA]
¡û
>w016660
AAQJ01000001
Gammaproteobacteria
Rickettsiella grylli [AAQJ]
852126
852054
-
Glu
TTC
[ENA]
¡û
>WENV180055516
MPLV02165346
[MPLV] marine metagenome; 100 m water sample filtered on 0.2 um supor filter
390
465
+
Glu
TTC
[ENA]
¡û
>WENV180254071
OBEQ010600784
[OBEQ] groundwater metagenome; groundwater
303
228
-
Glu
TTC
[ENA]
¡û
>WENV180261781
OBEQ011324879
[OBEQ] groundwater metagenome; groundwater
3
76
+
Glu
TTC
[ENA]
¡û
>WENV180592080
OCOV01183844
[OCOV] marine metagenome; ENVO:01000301
379
304
-
Glu
TTC
[ENA]
¡û
>WENV181144886
OEHO01124425
[OEHO] metagenome; unknown
74
1
-
Glu
TTC
[ENA]
¡û
>WENV181213168
OFBU01017041
[OFBU] metagenome; hydrothermal vent
158
233
+
Glu
TTC
[ENA]
¡û
>WENV181401839
OFTX01009984
[OFTX] sludge metagenome; sludge
230
155
-
Glu
TTC
[ENA]
¡û
>WENV181412743
OGCK01006005
[OGCK] hot springs metagenome; hot spring sediment
1684
1609
-
Glu
TTC
[ENA]
¡û
>WENV182575480
OJFV01000001
[OJFV] seawater metagenome; Sea water
384788
384713
-
Glu
TTC
[ENA]
¡û
>WENV182575486
OJFV01000002
[OJFV] seawater metagenome; Sea water
71285
71360
+
Glu
TTC
[ENA]
¡û
>WENV182575496
OJFV01000003
[OJFV] seawater metagenome; Sea water
84599
84524
-
Glu
TTC
[ENA]
¡û
>WENV170576581
FRDC01000986
[FRDC] freshwater metagenome; water
80386
80311
-
Glu
TTC
[ENA]
¡û
>WENV170646716
JQIA01001986
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
10868
10794
-
Glu
TTC
[ENA]
¡û
>WENV170660189
JXWT01024444
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
334
409
+
Glu
TTC
[ENA]
¡û
>WENV170695157
LGVE01054746
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
2024
1949
-
Glu
TTC
[ENA]
¡û
>WENV170697160
LGVF01087667
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
2147
2072
-
Glu
TTC
[ENA]
¡û
>C191145570
CP035704
Gammaproteobacteria
Pseudolysobacter antarcticus AQ6-296 [CP035704]
1714174
1714099
-
Glu
TTC
-
¡û
>W1910728822
MGXV01000071
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_37_14 [MGXV]
27174
27249
+
Glu
TTC
[ENA]
¡û
>W1910729006
MGYB01000001
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_41_15 [MGYB]
5775
5700
-
Glu
TTC
[ENA]
¡û
>W1910729040
MGYC01000009
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_41_20 [MGYC]
78159
78084
-
Glu
TTC
[ENA]
¡û
>C151002679
AP014633
Gammaproteobacteria
Thioploca ingrica [AP014633]
4676426
4676499
+
Glu
TTC
[Ensembl]
¡û
>W2010363240
CADDZF010000064
Gammaproteobacteria
Methylococcaceae bacterium [CADDZF]
11087
11012
-
Glu
TTC
[ENA]
¡û
>W2010532609
JAAONZ010000002
Gammaproteobacteria
Aestuariicella hydrocarbonica JCM 30134 [JAAONZ]
479961
479886
-
Glu
TTC
[ENA]
¡û
>W2010692637
JACGXL010000001
Gammaproteobacteria
Dokdonella fugitiva RH2WT43 [JACGXL]
730200
730275
+
Glu
TTC
[ENA]
¡û
>W2010692721
JACGXM010000019
Gammaproteobacteria
Dokdonella fugitiva RH1CCR139 [JACGXM]
759
684
-
Glu
TTC
[ENA]
¡û
>W2010862251
MGXV01000071
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_37_14 [MGXV]
27174
27249
+
Glu
TTC
[ENA]
¡û
>W2010862435
MGYB01000001
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_41_15 [MGYB]
5775
5700
-
Glu
TTC
[ENA]
¡û
>W2010862469
MGYC01000009
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_41_20 [MGYC]
78159
78084
-
Glu
TTC
[ENA]
¡û
>W2011412809
REFJ01000005
Gammaproteobacteria
Umboniibacter marinipuniceus DSM 25080 [REFJ]
55696
55771
+
Glu
TTC
[ENA]
¡û
>W2011412810
REFJ01000005
Gammaproteobacteria
Umboniibacter marinipuniceus DSM 25080 [REFJ]
55891
55966
+
Glu
TTC
[ENA]
¡û
>W2011412812
REFJ01000005
Gammaproteobacteria
Umboniibacter marinipuniceus DSM 25080 [REFJ]
56161
56236
+
Glu
TTC
[ENA]
¡û
>W2011412814
REFJ01000005
Gammaproteobacteria
Umboniibacter marinipuniceus DSM 25080 [REFJ]
56431
56506
+
Glu
TTC
[ENA]
¡û
>W2011622073
SLWQ01000006
Gammaproteobacteria
Dokdonella fugitiva A3 [SLWQ]
17080
17155
+
Glu
TTC
[ENA]
¡û
>W2011622501
SLWY01000010
Gammaproteobacteria
Plasticicumulans lactativorans DSM 25287 [SLWY]
8460
8385
-
Glu
TTC
[ENA]
¡û
>W2110522137
JAGDFX010000036
Gammaproteobacteria
Oceanisphaera sp. DM8 [JAGDFX]
307
382
+
Glu
TTC
[ENA]
¡û
>C201051339
CP032507
Gammaproteobacteria
Ectothiorhodospiraceae bacterium BW-2 [CP032507]
3785125
3785200
+
Glu
TTC
-
¡û
>C201281812
CP054689
Gammaproteobacteria
Ectothiorhodospiraceae bacterium 2226 [CP054689]
2947449
2947374
-
Glu
TTC
-
¡û
>C231365338
CP096017
Gammaproteobacteria
Alkalimarinus sp. SCSIO 12638 [CP096017]
4798875
4798950
+
Glu
TTC
-
¡û
>C231365360
CP096017
Gammaproteobacteria
Alkalimarinus sp. SCSIO 12638 [CP096017]
427757
427682
-
Glu
TTC
-
¡û
>C231365390
CP096018
Gammaproteobacteria
Alkalimarinus sp. SCSIO 12817 [CP096018]
4799208
4799283
+
Glu
TTC
-
¡û
>C231365412
CP096018
Gammaproteobacteria
Alkalimarinus sp. SCSIO 12817 [CP096018]
428057
427982
-
Glu
TTC
-
¡û
>W2110761131
QRAI01000001
Gammaproteobacteria
Saccharophagus sp. K07 [QRAI]
696939
697014
+
Glu
TTC
[ENA]
¡û
>C231437863
CP101527
Gammaproteobacteria
Alkalimarinus sediminis FA028 [CP101527]
1321175
1321250
+
Glu
TTC
-
¡û
>C231437882
CP101527
Gammaproteobacteria
Alkalimarinus sediminis FA028 [CP101527]
1771742
1771667
-
Glu
TTC
-
¡û
>C231437888
CP101527
Gammaproteobacteria
Alkalimarinus sediminis FA028 [CP101527]
1057668
1057593
-
Glu
TTC
-
¡û
>W1511510997
JXSO01000080
Gammaproteobacteria
Achromatium sp. WMS3 [JXSO]
847
772
-
Glu
TTC
[ENA]
¡û
>W1511681161
LFIJ01000002
Gammaproteobacteria
Gilvimarinus polysaccharolyticus YN3 [LFIJ]
1547923
1547998
+
Glu
TTC
[ENA]
¡û
>W1511681163
LFIJ01000002
Gammaproteobacteria
Gilvimarinus polysaccharolyticus YN3 [LFIJ]
1548119
1548194
+
Glu
TTC
[ENA]
¡û
>W1610920737
LSTE01000083
Gammaproteobacteria
Gammaproteobacteria bacterium SCGC AG-212-F23 [LSTE]
386
461
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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