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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.316758 (105 seq.)
>W1710921160
LNZG01000011
Actinomycetota
Leifsonia xyli subsp. xyli [LNZG]
43672
43597
-
Arg
CCG
[ENA]
¡û
>W131191161
ASHR01000030
Actinomycetota
Agrococcus pavilionensis RW1 [ASHR]
104031
103956
-
Arg
CCG
[ENA]
¡û
>W131162261
AQYK01000001
Actinomycetota
Leifsonia sp. 109 [AQYK]
1456426
1456351
-
Arg
CCG
[ENA]
¡û
>C171111587
CP020715
Actinomycetota
Cnuibacter physcomitrellae [CP020715]
2205543
2205618
+
Arg
CCG
-
¡û
>C012841
AE016822
Actinomycetota
Leifsonia xyli subsp. xyli str. CTCB07 [AE016822]
675568
675493
-
Arg
CCG
[Ensembl]
¡û
>WENV180016191
FSUF01000181
[FSUF] metagenome; soil
8012
7939
-
Arg
CCG
[ENA]
¡û
>WENV180016214
FSUF01001067
[FSUF] metagenome; soil
45
118
+
Arg
CCG
[ENA]
¡û
>WENV180017350
FSWU01000020
[FSWU] metagenome; soil
11511
11437
-
Arg
CCG
[ENA]
¡û
>WENV180101119
OAOU01000796
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
3986
4059
+
Arg
CCG
[ENA]
¡û
>WENV180103516
OAPA01059328
[OAPA] marine metagenome; ENVO:00002010
173
246
+
Arg
CCG
[ENA]
¡û
>WENV180104224
OAPB01131097
[OAPB] marine metagenome; Sterile flask
143
216
+
Arg
CCG
[ENA]
¡û
>WENV180114426
OAPS01008870
[OAPS] marine metagenome; sea water
572
645
+
Arg
CCG
[ENA]
¡û
>WENV180209050
OBAK01010098
[OBAK] marine metagenome; ENVO.00002150
165
238
+
Arg
CCG
[ENA]
¡û
>WENV180209982
OBAL01056949
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
225
299
+
Arg
CCG
[ENA]
¡û
>WENV180391640
OBPN01014210
[OBPN] marine metagenome; seawater
295
222
-
Arg
CCG
[ENA]
¡û
>WENV180395112
OBPT01001825
[OBPT] marine metagenome; ENVO:00002010 seawater
2193
2120
-
Arg
CCG
[ENA]
¡û
>WENV180585482
OCOL01012314
[OCOL] marine metagenome; ENVO:00002010
454
381
-
Arg
CCG
[ENA]
¡û
>WENV181166709
OEIU01001251
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
17181
17254
+
Arg
CCG
[ENA]
¡û
>WENV181325648
OFLJ01010809
[OFLJ] seawater metagenome; seawater
166
93
-
Arg
CCG
[ENA]
¡û
>W141188409
AYMR01000009
Actinomycetota
Leifsonia aquatica H1aii [AYMR]
71633
71558
-
Arg
CCG
[ENA]
¡û
>W141223285
BADC01000860
Actinomycetota
Corynebacterium-like bacterium B27 [BADC]
3719
3644
-
Arg
CCG
[ENA]
¡û
>WENV182540425
OJAJ01000575
[OJAJ] seawater metagenome; Sea water
350
423
+
Arg
CCG
[ENA]
¡û
>WENV182544279
OJBF01001526
[OJBF] seawater metagenome; Sea water
1105
1032
-
Arg
CCG
[ENA]
¡û
>WENV182545609
OJBN01008954
[OJBN] seawater metagenome; Sea water
469
396
-
Arg
CCG
[ENA]
¡û
>WENV182548554
OJBW01002269
[OJBW] seawater metagenome; Sea water
1043
970
-
Arg
CCG
[ENA]
¡û
>WENV182550206
OJBZ01011303
[OJBZ] seawater metagenome; Sea water
520
447
-
Arg
CCG
[ENA]
¡û
>WENV182553177
OJCR01000270
[OJCR] seawater metagenome; Sea water
23619
23546
-
Arg
CCG
[ENA]
¡û
>WENV182554074
OJCT01000535
[OJCT] seawater metagenome; Sea water
1211
1284
+
Arg
CCG
[ENA]
¡û
>WENV182561593
OJDX01000021
[OJDX] seawater metagenome; Sea water
7115
7188
+
Arg
CCG
[ENA]
¡û
>WENV182561924
OJDY01000014
[OJDY] seawater metagenome; Sea water
29321
29248
-
Arg
CCG
[ENA]
¡û
>WENV182562669
OJEA01000031
[OJEA] seawater metagenome; Sea water
30001
29928
-
Arg
CCG
[ENA]
¡û
>WENV182563020
OJEB01000001
[OJEB] seawater metagenome; Sea water
29951
29878
-
Arg
CCG
[ENA]
¡û
>WENV182568984
OJEY01000003
[OJEY] seawater metagenome; Sea water
34979
34906
-
Arg
CCG
[ENA]
¡û
>WENV182573742
OJFP01021313
[OJFP] seawater metagenome; Sea water
684
757
+
Arg
CCG
[ENA]
¡û
>WENV182574546
OJFS01000016
[OJFS] seawater metagenome; Sea water
86095
86168
+
Arg
CCG
[ENA]
¡û
>WENV182575781
OJFW01001324
[OJFW] seawater metagenome; Sea water
653
726
+
Arg
CCG
[ENA]
¡û
>WENV182576613
OJFY01000546
[OJFY] seawater metagenome; Sea water
777
850
+
Arg
CCG
[ENA]
¡û
>WENV182582071
OJHA01000001
[OJHA] seawater metagenome; Sea water
116126
116199
+
Arg
CCG
[ENA]
¡û
>WENV182582379
OJHB01000009
[OJHB] seawater metagenome; Sea water
38825
38898
+
Arg
CCG
[ENA]
¡û
>WENV182583336
OJHD01004402
[OJHD] seawater metagenome; Sea water
977
1050
+
Arg
CCG
[ENA]
¡û
>WENV182584824
OJHG01014361
[OJHG] seawater metagenome; Sea water
536
463
-
Arg
CCG
[ENA]
¡û
>WENV182587539
OJHN01000012
[OJHN] seawater metagenome; Sea water
24841
24768
-
Arg
CCG
[ENA]
¡û
>WENV182588414
OJHT01001061
[OJHT] seawater metagenome; Sea water
137
210
+
Arg
CCG
[ENA]
¡û
>WENV183054493
OLGU01000002
[OLGU] seawater metagenome; Sea water
181781
181854
+
Arg
CCG
[ENA]
¡û
>WENV183055056
OLGW01002560
[OLGW] seawater metagenome; Sea water
1084
1011
-
Arg
CCG
[ENA]
¡û
>WENV183058992
OLHS01000662
[OLHS] seawater metagenome; Sea water
1197
1124
-
Arg
CCG
[ENA]
¡û
>WENV183059205
OLHU01000006
[OLHU] seawater metagenome; Sea water
21252
21179
-
Arg
CCG
[ENA]
¡û
>WENV183060164
OLHX01000005
[OLHX] seawater metagenome; Sea water
32502
32575
+
Arg
CCG
[ENA]
¡û
>WENV183061107
OLHY01049510
[OLHY] seawater metagenome; Sea water
156
83
-
Arg
CCG
[ENA]
¡û
>WENV183619505
OOFQ01010888
[OOFQ] marine metagenome; seawater
166
93
-
Arg
CCG
[ENA]
¡û
>WENV170568223
FLMP01023028
[FLMP] seawater metagenome; seawater
1240
1313
+
Arg
CCG
[ENA]
¡û
>WENV170570736
FLOH01000020
[FLOH] marine metagenome; water
260303
260376
+
Arg
CCG
[ENA]
¡û
>WENV170572651
FLOH01001118
[FLOH] marine metagenome; water
22291
22218
-
Arg
CCG
[ENA]
¡û
>WENV170868902
MDTB01168948
[MDTB] marine metagenome; seawater
1047
1120
+
Arg
CCG
[ENA]
¡û
>WENV170933937
MDTG01229381
[MDTG] marine metagenome; seawater
777
702
-
Arg
CCG
[ENA]
¡û
>WENV170935835
MDTG01264464
[MDTG] marine metagenome; seawater
1960
1885
-
Arg
CCG
[ENA]
¡û
>WENV170951291
MEHZ011546141
[MEHZ] marine metagenome; marine surface water
22029
21956
-
Arg
CCG
[ENA]
¡û
>C181196614
CP031192
Actinomycetota
Humibacter sp. BT305 [CP031192]
2241424
2241350
-
Arg
CCG
-
¡û
>W1910231896
FPEG01000001
Actinomycetota
Agrococcus sp. Marseille-P2731 [FPEG]
660057
659982
-
Arg
CCG
[ENA]
¡û
>W1810684464
QKXI01000010
Actinomycetota
Leifsonia sp. ku-ls [QKXI]
117282
117208
-
Arg
CCG
[ENA]
¡û
>W2010385439
FPEG01000001
Actinomycetota
Agrococcus sp. Marseille-P2731 [FPEG]
660057
659982
-
Arg
CCG
[ENA]
¡û
>W2010472199
JAAHFD010000002
Actinomycetota
Diaminobutyricimonas sp. TR449 [JAAHFD]
154995
154922
-
Arg
CCG
[ENA]
¡û
>W2010473304
JAAIJT010000001
Actinomycetota
Salinibacterium sp. ZJ450 [JAAIJT]
162155
162080
-
Arg
CCG
[ENA]
¡û
>W2010591152
JABEKS010000002
Actinomycetota
Planctomonas sp. JC2975 [JABEKS]
334455
334382
-
Arg
CCG
[ENA]
¡û
>W2010671065
JACCBM010000001
Actinomycetota
Herbiconiux flava DSM 26474 [JACCBM]
2973814
2973887
+
Arg
CCG
[ENA]
¡û
>W2010672220
JACCCH010000001
Actinomycetota
Leifsonia sp. AK011 [JACCCH]
1515715
1515642
-
Arg
CCG
[ENA]
¡û
>W2010674646
JACCFL010000001
Actinomycetota
Leifsonia shinshuensis DSM 15165 [JACCFL]
3114936
3115009
+
Arg
CCG
[ENA]
¡û
>W2010714079
JACHVP010000001
Actinomycetota
Leifsonia aquatica DSM 20146 [JACHVP]
566549
566475
-
Arg
CCG
[ENA]
¡û
>W2011391820
RBZZ01000012
Actinomycetota
Agrococcus lahaulensis LZB059 [RBZZ]
25668
25743
+
Arg
CCG
[ENA]
¡û
>W2011392679
RCCO01000001
Actinomycetota
Leifsonia sp. M321 24_2 [RCCO]
843382
843308
-
Arg
CCG
[ENA]
¡û
>W2011447442
RKHJ01000001
Actinomycetota
Agrococcus jenensis DSM 9580 [RKHJ]
1819240
1819167
-
Arg
CCG
[ENA]
¡û
>W2011539021
SCNK01000039
Actinomycetota
Microbacteriaceae bacterium 3P27C6 [SCNK]
32345
32420
+
Arg
CCG
[ENA]
¡û
>SRA1046568
SRR035093.334951
454 Sequencing (SRP001814)
240
167
-
Arg
CCG
[SRA]
>W2011650152
SNYB01000001
Actinomycetota
Leifsonia sp. 115AMFTsu3.1 [SNYB]
1456551
1456476
-
Arg
CCG
[ENA]
¡û
>W2011659884
SOFI01000003
Actinomycetota
Cryobacterium mesophilum CGMCC 1.10440 [SOFI]
731161
731235
+
Arg
CCG
[ENA]
¡û
>W2012093689
VMSF01000001
Actinomycetota
Leifsonia sp. AG29 [VMSF]
1017926
1017851
-
Arg
CCG
[ENA]
¡û
>W2012104637
VOIR01000015
Actinomycetota
Agrococcus sp. NS18 [VOIR]
162076
162001
-
Arg
CCG
[ENA]
¡û
>SRA1052644
SRR035098.243820
454 Sequencing (SRP001819)
322
247
-
Arg
CCG
[SRA]
>SRA1053314
SRR035098.381075
454 Sequencing (SRP001819)
324
249
-
Arg
CCG
[SRA]
>W2110024763
BMHD01000001
Actinomycetota
Cnuibacter physcomitrellae CGMCC 1.15041 [BMHD]
726460
726534
+
Arg
CCG
[ENA]
¡û
>W2110030398
BMLM01000002
Actinomycetota
Agrococcus terreus CGMCC 1.6960 [BMLM]
165160
165085
-
Arg
CCG
[ENA]
¡û
>W2110068912
BPER01000013
Actinomycetota
Leifsonia sp. LS1 [BPER]
79354
79280
-
Arg
CCG
[ENA]
¡û
>W2110176831
JABFAP010000001
Actinomycetota
Agrococcus sp. KRD186 [JABFAP]
262624
262549
-
Arg
CCG
[ENA]
¡û
>W2110195953
JABXWQ010000003
Actinomycetota
Cryobacterium sp. BB736 [JABXWQ]
133581
133654
+
Arg
CCG
[ENA]
¡û
>W2110329691
JADKSG010000002
Actinomycetota
Herbiconiux sp. VKM Ac-1786 [JADKSG]
846534
846607
+
Arg
CCG
[ENA]
¡û
>W2110522593
JAGEKO010000004
Actinomycetota
Agrococcus sp. TF02-5 [JAGEKO]
22936
23010
+
Arg
CCG
[ENA]
¡û
>W2110522667
JAGEKP010000029
Actinomycetota
Leifsonia sp. TF02-11 [JAGEKP]
47432
47506
+
Arg
CCG
[ENA]
¡û
>C201109267
CP042305
Actinomycetota
Humibacter sp. WJ7-1 [CP042305]
4118110
4118035
-
Arg
CCG
-
¡û
>C201261328
CP053344
Actinomycetota
Herbiconiux sp. SALV-R1 [CP053344]
1900343
1900416
+
Arg
CCG
-
¡û
>C211060391
CP043641
Actinomycetota
Leifsonia shinshuensis INR9 [CP043641]
1357464
1357538
+
Arg
CCG
-
¡û
>C211153137
CP061771
Actinomycetota
Salinibacterium sp. ZJ450 [CP061771]
757123
757048
-
Arg
CCG
-
¡û
>C231201739
CP085036
Actinomycetota
Microbacteriaceae bacterium SG_E_30_P1 [CP085036]
494214
494289
+
Arg
CCG
-
¡û
>C231565347
CP115175
Actinomycetota
Homoserinibacter sp. YIM 151385 [CP115175]
289738
289664
-
Arg
CCG
-
¡û
>C231639132
CP121252
Actinomycetota
Citricoccus muralis P2 [CP121252]
1335664
1335589
-
Arg
CCG
-
¡û
>W2310022029
BSEN01000013
Actinomycetota
Leifsonia poae VKM Ac-1401 [BSEN]
274980
274907
-
Arg
CCG
[ENA]
¡û
>C161076863
CP014761
Actinomycetota
Leifsonia xyli SE134 [CP014761]
3433889
3433814
-
Arg
CCG
[Ensembl]
¡û
>W1610069762
BCST01000004
Actinomycetota
Herbiconiux solani NBRC 106740 [BCST]
27143
27216
+
Arg
CCG
[ENA]
¡û
>W1610597649
LFFC01000017
Actinomycetota
Actinobacteria bacterium casp-actino3 [LFFC]
2528
2455
-
Arg
CCG
[ENA]
¡û
>W1610722706
LMCU01000002
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
449083
449156
+
Arg
CCG
[ENA]
¡û
>W1610738508
LMOZ01000002
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
908577
908502
-
Arg
CCG
[ENA]
¡û
>W1710067135
BCST01000004
Actinomycetota
Herbiconiux solani NBRC 106740 [BCST]
27143
27216
+
Arg
CCG
[ENA]
¡û
>W1710532030
FNPZ01000002
Actinomycetota
Herbiconiux ginsengi [FNPZ]
466313
466386
+
Arg
CCG
[ENA]
¡û
>W1710540791
FNXD01000003
Actinomycetota
Leifsonia sp. CL154 [FNXD]
52270
52195
-
Arg
CCG
[ENA]
¡û
>W1710575820
FOZN01000001
Actinomycetota
Agrococcus baldri [FOZN]
240743
240818
+
Arg
CCG
[ENA]
¡û
>W1710718896
LFFC01000017
Actinomycetota
Actinobacteria bacterium casp-actino3 [LFFC]
2528
2455
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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