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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.317016 (55 seq.)
>WENV180521976
OCHG01000003
[OCHG] human gut metagenome; human gut
2218
2293
+
Lys
TTT
[ENA]
¡û
>WENV180616051
OCPZ01155984
[OCPZ] human gut metagenome; human gut
108
33
-
Lys
TTT
[ENA]
¡û
>WENV180661273
OCVV011002007
[OCVV] gut metagenome; gut
1958
2033
+
Lys
TTT
[ENA]
¡û
>WENV180661274
OCVV011002007
[OCVV] gut metagenome; gut
1958
2033
+
Lys
TTT
[ENA]
¡û
>WENV180663579
OCVV011126286
[OCVV] gut metagenome; gut
2727
2652
-
Lys
TTT
[ENA]
¡û
>WENV180663580
OCVV011126286
[OCVV] gut metagenome; gut
2727
2652
-
Lys
TTT
[ENA]
¡û
>WENV180668203
OCVV011254845
[OCVV] gut metagenome; gut
1273
1348
+
Lys
TTT
[ENA]
¡û
>WENV180668204
OCVV011254845
[OCVV] gut metagenome; gut
1273
1348
+
Lys
TTT
[ENA]
¡û
>WENV180671226
OCVV011314083
[OCVV] gut metagenome; gut
100
175
+
Lys
TTT
[ENA]
¡û
>WENV180671229
OCVV011314083
[OCVV] gut metagenome; gut
100
175
+
Lys
TTT
[ENA]
¡û
>WENV180681849
OCVV012807099
[OCVV] gut metagenome; gut
103
178
+
Lys
TTT
[ENA]
¡û
>WENV180681850
OCVV012807099
[OCVV] gut metagenome; gut
103
178
+
Lys
TTT
[ENA]
¡û
>WENV180682041
OCVV012822797
[OCVV] gut metagenome; gut
450
525
+
Lys
TTT
[ENA]
¡û
>WENV180682042
OCVV012822797
[OCVV] gut metagenome; gut
450
525
+
Lys
TTT
[ENA]
¡û
>WENV181133641
OEGF01001181
[OEGF] human metagenome; G_DNA_Stool
12350
12275
-
Lys
TTT
[ENA]
¡û
>WENV181236109
OFEY01033220
[OFEY] mouse gut metagenome; faeces
303
378
+
Lys
TTT
[ENA]
¡û
>WENV181238180
OFFB01028456
[OFFB] mouse gut metagenome; faeces
471
546
+
Lys
TTT
[ENA]
¡û
>WENV181262943
OFFY01085774
[OFFY] mouse gut metagenome; faeces
146
71
-
Lys
TTT
[ENA]
¡û
>WENV181265170
OFGA01036211
[OFGA] mouse gut metagenome; faeces
459
534
+
Lys
TTT
[ENA]
¡û
>WENV181269884
OFGE01011111
[OFGE] mouse gut metagenome; faeces
3255
3180
-
Lys
TTT
[ENA]
¡û
>WENV181301150
OFHN01040237
[OFHN] mouse gut metagenome; faeces
272
197
-
Lys
TTT
[ENA]
¡û
>WENV182029486
OHCQ01004385
[OHCQ] human gut metagenome; feces
632
557
-
Lys
TTT
[ENA]
¡û
>WENV182148681
OHLF01002436
[OHLF] human gut metagenome; feces
2222
2297
+
Lys
TTT
[ENA]
¡û
>WENV182170118
OHMV01015036
[OHMV] human gut metagenome; feces
251
326
+
Lys
TTT
[ENA]
¡û
>WENV182176394
OHNI01002318
[OHNI] human gut metagenome; feces
2439
2514
+
Lys
TTT
[ENA]
¡û
>WENV182186813
OHOJ01004903
[OHOJ] human gut metagenome; feces
618
543
-
Lys
TTT
[ENA]
¡û
>WENV182240518
OHSE01016055
[OHSE] human gut metagenome; feces
566
641
+
Lys
TTT
[ENA]
¡û
>WENV182535809
OIXH01000007
[OIXH] human gut metagenome; faeces
60829
60904
+
Lys
TTT
[ENA]
¡û
>WENV183039660
OLGB01011546
[OLGB] human gut metagenome; faeces
379
304
-
Lys
TTT
[ENA]
¡û
>WENV183122207
OLNV01016697
[OLNV] human gut metagenome; faeces
538
613
+
Lys
TTT
[ENA]
¡û
>WENV183178348
OLPH01000036
[OLPH] human gut metagenome; faeces
7125
7200
+
Lys
TTT
[ENA]
¡û
>WENV183218893
OLQJ01014307
[OLQJ] human gut metagenome; faeces
143
68
-
Lys
TTT
[ENA]
¡û
>WENV183706066
PDWI01003018
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
17758
17833
+
Lys
TTT
[ENA]
¡û
>WENV183706521
PDWI01004545
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
176
101
-
Lys
TTT
[ENA]
¡û
>WENV183707889
PDWI01011283
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2913
2838
-
Lys
TTT
[ENA]
¡û
>WENV183709075
PDWI01023483
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
103
178
+
Lys
TTT
[ENA]
¡û
>WENV183711080
PDWI01060712
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
448
523
+
Lys
TTT
[ENA]
¡û
>WENV183713299
PDWI01133259
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
73
148
+
Lys
TTT
[ENA]
¡û
>WENV183715416
PDWI01239411
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
805
880
+
Lys
TTT
[ENA]
¡û
>WENV183721615
PDWJ01077373
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
803
878
+
Lys
TTT
[ENA]
¡û
>WENV183722268
PDWJ01115883
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
739
664
-
Lys
TTT
[ENA]
¡û
>WENV170030642
CDYI01022471
[CDYI] gut metagenome; human stools
59205
59280
+
Lys
TTT
[ENA]
¡û
>WENV170034041
CDYK01039188
[CDYK] gut metagenome; human stools
428228
428153
-
Lys
TTT
[ENA]
¡û
>WENV170775986
LXOW01113287
[LXOW] bovine gut metagenome; Cow rumen
205
130
-
Lys
TTT
[ENA]
¡û
>WENV170776228
LXOW01145271
[LXOW] bovine gut metagenome; Cow rumen
1455
1530
+
Lys
TTT
[ENA]
¡û
>W2110248293
JACRTG010000003
Bacillota
Tissierellaceae bacterium BX21 [JACRTG]
28553
28628
+
Lys
TTT
[ENA]
¡û
>W2110248312
JACRTG010000021
Bacillota
Tissierellaceae bacterium BX21 [JACRTG]
32079
32007
-
Lys
TTT
[ENA]
¡û
>W2110622751
JAHLQK010000018
Bacillota
Alkaliphilus sp. MSJ-5 [JAHLQK]
878
803
-
Lys
TTT
[ENA]
¡û
>C211116812
CP058557
Bacillota
Alkaliphilus sp. B6464 [CP058557]
2320434
2320509
+
Lys
TTT
-
¡û
>C211290943
CP071445
Bacillota
Sedimentibacter sp. zth1 [CP071445]
2482324
2482399
+
Lys
TTT
-
¡û
>C211290957
CP071445
Bacillota
Sedimentibacter sp. zth1 [CP071445]
1378195
1378120
-
Lys
TTT
-
¡û
>C211290975
CP071445
Bacillota
Sedimentibacter sp. zth1 [CP071445]
1370671
1370596
-
Lys
TTT
-
¡û
>C211291014
CP071445
Bacillota
Sedimentibacter sp. zth1 [CP071445]
1156717
1156642
-
Lys
TTT
-
¡û
>C211291022
CP071445
Bacillota
Sedimentibacter sp. zth1 [CP071445]
1143723
1143648
-
Lys
TTT
-
¡û
>C211291024
CP071445
Bacillota
Sedimentibacter sp. zth1 [CP071445]
1135309
1135234
-
Lys
TTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK