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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.317323 (62 seq.)
>W131186706
ARWI01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Kp2 Kp2 [ARWI]
1754645
1754570
-
Phe
GAA
[ENA]
¡û
>W1711438282
MIQH01000618
Gammaproteobacteria
Bathymodiolus thermophilus thioautotrophic gill symbiont [MIQH]
4505
4580
+
Phe
GAA
[ENA]
¡û
>WENV180241645
OBDI01000019
[OBDI] metagenome; diffuse fluid
16807
16732
-
Phe
GAA
[ENA]
¡û
>WENV180274907
OBHO01004528
[OBHO] metagenome; water
4
79
+
Phe
GAA
[ENA]
¡û
>WENV180274982
OBHR01000092
[OBHR] metagenome; water
3973
3898
-
Phe
GAA
[ENA]
¡û
>WENV180275205
OBHT01000018
[OBHT] metagenome; hydrothermal vent
12254
12329
+
Phe
GAA
[ENA]
¡û
>WENV180276794
OBHV01000059
[OBHV] metagenome; water
2320
2245
-
Phe
GAA
[ENA]
¡û
>WENV180287681
OBIL01000202
[OBIL] metagenome; hydrothermal vent
2182
2107
-
Phe
GAA
[ENA]
¡û
>WENV180299283
OBJC01000333
[OBJC] metagenome; water
4946
5021
+
Phe
GAA
[ENA]
¡û
>WENV180316932
OBKJ01001889
[OBKJ] metagenome; hydrothermal vent
1641
1716
+
Phe
GAA
[ENA]
¡û
>WENV180332348
OBLD01000426
[OBLD] metagenome; water
1609
1684
+
Phe
GAA
[ENA]
¡û
>WENV180580840
OCMH01000113
[OCMH] metagenome; diffuse fluid
2182
2107
-
Phe
GAA
[ENA]
¡û
>WENV180581773
OCML01000064
[OCML] metagenome; diffuse fluid
1264
1189
-
Phe
GAA
[ENA]
¡û
>WENV180582076
OCMO01000052
[OCMO] metagenome; diffuse fluid
4115
4040
-
Phe
GAA
[ENA]
¡û
>WENV180583048
OCNB01000019
[OCNB] metagenome; diffuse fluid
2520
2595
+
Phe
GAA
[ENA]
¡û
>WENV180634282
OCRB01000070
[OCRB] metagenome; diffuse fluid
2320
2245
-
Phe
GAA
[ENA]
¡û
>WENV181206334
OFAT01007087
[OFAT] metagenome; hydrothermal vent
435
360
-
Phe
GAA
[ENA]
¡û
>WENV181206652
OFAW01001000
[OFAW] metagenome; hydrothermal vent
689
764
+
Phe
GAA
[ENA]
¡û
>WENV181207032
OFAY01000067
[OFAY] metagenome; hydrothermal vent
2703
2628
-
Phe
GAA
[ENA]
¡û
>WENV181207483
OFAZ01000911
[OFAZ] metagenome; hydrothermal vent
2752
2677
-
Phe
GAA
[ENA]
¡û
>WENV181207904
OFBA01002395
[OFBA] metagenome; hydrothermal vent
715
790
+
Phe
GAA
[ENA]
¡û
>WENV181208210
OFBB01000575
[OFBB] metagenome; hydrothermal vent
3060
2985
-
Phe
GAA
[ENA]
¡û
>WENV181208646
OFBC01000723
[OFBC] metagenome; hydrothermal vent
728
803
+
Phe
GAA
[ENA]
¡û
>WENV181208907
OFBD01000209
[OFBD] metagenome; hydrothermal vent
1391
1316
-
Phe
GAA
[ENA]
¡û
>WENV181209313
OFBE01000086
[OFBE] metagenome; hydrothermal vent
2839
2764
-
Phe
GAA
[ENA]
¡û
>WENV181209819
OFBF01002484
[OFBF] metagenome; hydrothermal vent
80
5
-
Phe
GAA
[ENA]
¡û
>WENV181210304
OFBH01000110
[OFBH] metagenome; hydrothermal vent
3056
2981
-
Phe
GAA
[ENA]
¡û
>WENV181210674
OFBI01000010
[OFBI] metagenome; hydrothermal vent
5388
5463
+
Phe
GAA
[ENA]
¡û
>WENV181211225
OFBK01000060
[OFBK] metagenome; hydrothermal vent
7340
7415
+
Phe
GAA
[ENA]
¡û
>WENV181213384
OFBV01001116
[OFBV] metagenome; hydrothermal vent
1024
1099
+
Phe
GAA
[ENA]
¡û
>WENV181213773
OFBW01000102
[OFBW] metagenome; hydrothermal vent
5413
5488
+
Phe
GAA
[ENA]
¡û
>WENV181214856
OFBY01023899
[OFBY] metagenome; hydrothermal vent
489
564
+
Phe
GAA
[ENA]
¡û
>WENV181216069
OFCB01002788
[OFCB] metagenome; hydrothermal vent
1894
1819
-
Phe
GAA
[ENA]
¡û
>WENV181216431
OFCC01000016
[OFCC] metagenome; hydrothermal vent
15878
15803
-
Phe
GAA
[ENA]
¡û
>WENV181223981
OFDD01006553
[OFDD] metagenome; hydrothermal vent
670
595
-
Phe
GAA
[ENA]
¡û
>WENV181224248
OFDE01002209
[OFDE] metagenome; hydrothermal vent
833
908
+
Phe
GAA
[ENA]
¡û
>WENV181224921
OFDH01000014
[OFDH] metagenome; hydrothermal vent
5011
5086
+
Phe
GAA
[ENA]
¡û
>WENV181225346
OFDI01000233
[OFDI] metagenome; hydrothermal vent
2718
2643
-
Phe
GAA
[ENA]
¡û
>WENV181228105
OFDO01000240
[OFDO] metagenome; hydrothermal vent
4512
4587
+
Phe
GAA
[ENA]
¡û
>WENV170575861
FPHS01000021
[FPHS] hydrothermal vent metagenome genome assembly, contig: NODE_196.; water
4118
4193
+
Phe
GAA
[ENA]
¡û
>WENV170575988
FPHW01000167
[FPHW] hydrothermal vent metagenome genome assembly, contig: NODE_364.; water
4114
4189
+
Phe
GAA
[ENA]
¡û
>WENV170575997
FPHW01000223
[FPHW] hydrothermal vent metagenome genome assembly, contig: NODE_364.; water
6565
6490
-
Phe
GAA
[ENA]
¡û
>WENV170576005
FPHX01000035
[FPHX] hydrothermal vent metagenome genome assembly, contig: NODE_313.; water
5303
5378
+
Phe
GAA
[ENA]
¡û
>WENV170576027
FPHX01000305
[FPHX] hydrothermal vent metagenome genome assembly, contig: NODE_313.; water
8476
8401
-
Phe
GAA
[ENA]
¡û
>WENV170664053
JYMV01012426
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
5053
4978
-
Phe
GAA
[ENA]
¡û
>WENV170665989
JYMV01032125
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
4089
4164
+
Phe
GAA
[ENA]
¡û
>WENV170666639
JYMV01039223
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
15
90
+
Phe
GAA
[ENA]
¡û
>WENV170667283
JYMV01045592
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
2154
2229
+
Phe
GAA
[ENA]
¡û
>WENV170763980
LWDU01026478
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
12
87
+
Phe
GAA
[ENA]
¡û
>WENV170763982
LWDU01026488
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
3714
3639
-
Phe
GAA
[ENA]
¡û
>WENV170766686
LWDU01042429
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
37721
37646
-
Phe
GAA
[ENA]
¡û
>WENV170766786
LWDU01042765
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
19011
18936
-
Phe
GAA
[ENA]
¡û
>C191004390
AP018722
Gammaproteobacteria
Thiomicrorhabdus aquaedulcis HaS4 [AP018722]
2289025
2289100
+
Phe
GAA
-
¡û
>C191027359
CP024634
Gammaproteobacteria
Bathymodiolus thermophilus thioautotrophic gill symbiont EPR9N [CP024634]
149749
149824
+
Phe
GAA
-
¡û
>C191098447
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
2720918
2720843
-
Phe
GAA
-
¡û
>W141700057
JMIU01000001
Gammaproteobacteria
Hydrogenovibrio marinus [JMIU]
1253593
1253518
-
Phe
GAA
[ENA]
¡û
>C151071158
CP010552
Gammaproteobacteria
Candidatus Thioglobus autotrophicus EF1 [CP010552]
795331
795406
+
Phe
GAA
-
¡û
>W2010391890
FQNS01000053
Gammaproteobacteria
Bathymodiolus thermophilus thioautotrophic gill symbiont [FQNS]
29908
29983
+
Phe
GAA
[ENA]
¡û
>W2010663077
JACBGH010000006
Gammaproteobacteria
Thiomicrorhabdus sp. HH3 [JACBGH]
136097
136022
-
Phe
GAA
[ENA]
¡û
>ENV09001924
ACSG01000011
Uncultured SUP05 cluster bacterium Contig34382
747
822
+
Phe
GAA
[ENA]
¡û
>W2110078901
CAESAR020000038
Gammaproteobacteria
Bathymodiolus thermophilus thioautotrophic gill symbiont [CAESAR]
36543
36468
-
Phe
GAA
[ENA]
¡û
>C241004874
AP021889
Gammaproteobacteria
Thiosulfatimonas sediminis aks77 [AP021889]
2647948
2648023
+
Phe
GAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK