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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.317329 (26 seq.)
>W131215462
ATVA01000013
Thermodesulfobacteriota
Paucidesulfovibrio longus DSM 6739 [ATVA]
320354
320429
+
Asn
GTT
[ENA]
¡û
>WENV180043782
LQAI01019457
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
370
295
-
Asn
GTT
[ENA]
¡û
>W141277878
JAEX01000014
Thermodesulfobacteriota
Desulfocurvus vexinensis DSM 17965 [JAEX]
48045
48120
+
Asn
GTT
[ENA]
¡û
>WENV183705945
PDWI01002694
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
8319
8244
-
Asn
GTT
[ENA]
¡û
>WENV183746864
PPCM01000024
[PPCM] marine sediment metagenome; marine sediment
87118
87043
-
Asn
GTT
[ENA]
¡û
>WENV170419813
CEUM01137962
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
26487
26562
+
Asn
GTT
[ENA]
¡û
>WENV170440314
CEUV01088424
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3087
3012
-
Asn
GTT
[ENA]
¡û
>WENV170895352
MDTD01078053
[MDTD] marine metagenome; seawater
5213
5288
+
Asn
GTT
[ENA]
¡û
>C181227019
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
233021
232946
-
Asn
GTT
-
¡û
>C191000279
AP017378
Thermodesulfobacteriota
Desulfovibrio ferrophilus IS5 [AP017378]
364654
364579
-
Asn
GTT
-
¡û
>W1911738010
QTZO01000004
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
299306
299231
-
Asn
GTT
[ENA]
¡û
>W2011303457
QTZO01000004
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
299306
299231
-
Asn
GTT
[ENA]
¡û
>W2011654889
SOBK01000003
Thermodesulfobacteriota
Pseudodesulfovibrio indicus DSM 101483 [SOBK]
364652
364577
-
Asn
GTT
[ENA]
¡û
>W2012226827
WAIE01000001
Thermodesulfobacteriota
Desulfovibrio senegalensis DSM 101509 [WAIE]
1152520
1152445
-
Asn
GTT
[ENA]
¡û
>W2012442048
WUEH01000018
Thermodesulfobacteriota
Pseudodesulfovibrio sp. JC047 [WUEH]
69900
69975
+
Asn
GTT
[ENA]
¡û
>W2012442049
WUEH01000018
Thermodesulfobacteriota
Pseudodesulfovibrio sp. JC047 [WUEH]
70467
70542
+
Asn
GTT
[ENA]
¡û
>C231004569
AP024485
Thermodesulfobacteriota
Pseudodesulfovibrio sediminis SF6 [AP024485]
593048
593123
+
Asn
GTT
-
¡û
>C241008550
AP026709
Thermodesulfobacteriota
Pseudodesulfovibrio nedwellii SYK [AP026709]
845661
845736
+
Asn
GTT
-
¡û
>C241008551
AP026709
Thermodesulfobacteriota
Pseudodesulfovibrio nedwellii SYK [AP026709]
845877
845952
+
Asn
GTT
-
¡û
>C241053612
CP040751
Thermodesulfobacteriota
Salidesulfovibrio onnuriiensis IOR2 [CP040751]
2487400
2487325
-
Asn
GTT
-
¡û
>C241053613
CP040751
Thermodesulfobacteriota
Salidesulfovibrio onnuriiensis IOR2 [CP040751]
2487039
2486964
-
Asn
GTT
-
¡û
>C241109012
CP046400
Thermodesulfobacteriota
Pseudodesulfovibrio cashew SRB007 [CP046400]
2909924
2909849
-
Asn
GTT
-
¡û
>W11149106
AEUJ01000002
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
27522
27597
+
Asn
GTT
[ENA]
¡û
>C161068276
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
2505627
2505552
-
Asn
GTT
[Ensembl]
¡û
>C131017957
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
197671
197596
-
Asn
GTT
[Ensembl]
¡û
>W1710602298
FUYC01000003
Thermodesulfobacteriota
Paucidesulfovibrio gracilis DSM 16080 [FUYC]
152534
152459
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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