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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.317860 (61 seq.)
>W1710923785
LOCK01000001
Bacillota
Desulfitobacterium hafniense [LOCK]
73533
73608
+
Lys
TTT
[ENA]
¡û
>W1710923824
LOCK01000048
Bacillota
Desulfitobacterium hafniense [LOCK]
780
705
-
Lys
TTT
[ENA]
¡û
>W1711391627
MELW01000320
Bacillota
Alicyclobacillus sp. RIFOXYA1_FULL_53_8 [MELW]
18279
18354
+
Lys
TTT
[ENA]
¡û
>W1711926251
NADJ01000003
Bacillota
Desulfosporosinus sp. FKB [NADJ]
6240
6315
+
Lys
TTT
[ENA]
¡û
>W1711926268
NADJ01000027
Bacillota
Desulfosporosinus sp. FKB [NADJ]
65607
65532
-
Lys
TTT
[ENA]
¡û
>W1711926279
NADJ01000036
Bacillota
Desulfosporosinus sp. FKB [NADJ]
203169
203094
-
Lys
TTT
[ENA]
¡û
>W1711932737
NAHZ01000019
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
1550
1475
-
Lys
TTT
[ENA]
¡û
>W1711932755
NAHZ01000032
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
121647
121722
+
Lys
TTT
[ENA]
¡û
>W1711932776
NAHZ01000033
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
273310
273385
+
Lys
TTT
[ENA]
¡û
>W131162708
AQZD01000007
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
193603
193678
+
Lys
TTT
[ENA]
¡û
>W131162731
AQZD01000013
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
3230
3155
-
Lys
TTT
[ENA]
¡û
>W141085088
AURB01000028
Bacillota
Alicyclobacillus acidoterrestris ATCC 49025 [AURB]
5965
5890
-
Lys
TTT
[ENA]
¡û
>W141085120
AURB01000112
Bacillota
Alicyclobacillus acidoterrestris ATCC 49025 [AURB]
7585
7511
-
Lys
TTT
[ENA]
¡û
>W141085123
AURB01000121
Bacillota
Alicyclobacillus acidoterrestris ATCC 49025 [AURB]
367
292
-
Lys
TTT
[ENA]
¡û
>W141246657
CANF01002296
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
5616
5541
-
Lys
TTT
[ENA]
¡û
>WENV183670921
ORJL011003627
[ORJL] groundwater metagenome; groundwater
201
126
-
Lys
TTT
[ENA]
¢þ
>WENV183673785
ORJL011317769
[ORJL] groundwater metagenome; groundwater
814
889
+
Lys
TTT
[ENA]
¢þ
>W141558277
JHVU01000006
Bacillota
Desulfitibacter alkalitolerans DSM 16504 [JHVU]
15418
15343
-
Lys
TTT
[ENA]
¡û
>W141558295
JHVU01000012
Bacillota
Desulfitibacter alkalitolerans DSM 16504 [JHVU]
34306
34231
-
Lys
TTT
[ENA]
¡û
>C141011743
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
1153448
1153523
+
Lys
TTT
[Ensembl]
¡û
>W1810004233
BFAV01000030
Bacillota
Desulfocucumis palustris NAW-5 [BFAV]
4119
4194
+
Lys
TTT
[ENA]
¡û
>W1810004244
BFAV01000104
Bacillota
Desulfocucumis palustris NAW-5 [BFAV]
68296
68221
-
Lys
TTT
[ENA]
¡û
>C151016316
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
3145125
3145050
-
Lys
TTT
[Ensembl]
¡û
>C151016333
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2174532
2174457
-
Lys
TTT
[Ensembl]
¡û
>C151016347
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2172775
2172700
-
Lys
TTT
[Ensembl]
¡û
>C11122574
CP002728
Bacillota
Tepidanaerobacter acetatoxydans Re1 [CP002728]
2733494
2733419
-
Lys
TTT
[Ensembl]
¡û
>W1511430082
JUEF01000049
Bacillota
Peptococcaceae bacterium BICA1-8 [JUEF]
41854
41929
+
Lys
TTT
[ENA]
¡û
>W1511564286
LADP01000024
Bacillota
Peptococcaceae bacterium BRH_c8a [LADP]
11651
11726
+
Lys
TTT
[ENA]
¡û
>W1511564482
LADT01000068
Bacillota
Clostridiaceae bacterium BRH_c20a [LADT]
13269
13344
+
Lys
TTT
[ENA]
¡û
>W1511564495
LADT01000084
Bacillota
Clostridiaceae bacterium BRH_c20a [LADT]
5084
5159
+
Lys
TTT
[ENA]
¡û
>W1511646008
LDZY01000003
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
253316
253241
-
Lys
TTT
[ENA]
¡û
>W1511646019
LDZY01000011
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
157839
157764
-
Lys
TTT
[ENA]
¡û
>W1511646041
LDZY01000036
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
5001
5076
+
Lys
TTT
[ENA]
¡û
>C121011430
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2107054
2107129
+
Lys
TTT
[Ensembl]
¡û
>C121011445
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2108716
2108791
+
Lys
TTT
[Ensembl]
¡û
>C121011460
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
4295919
4295844
-
Lys
TTT
[Ensembl]
¡û
>C121014848
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
103537
103612
+
Lys
TTT
[Ensembl]
¡û
>C121014874
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
4887300
4887225
-
Lys
TTT
[Ensembl]
¡û
>C121014896
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
2883288
2883213
-
Lys
TTT
[Ensembl]
¡û
>W121010348
AGJE01000008
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
121745
121820
+
Lys
TTT
[ENA]
¡û
>W121010372
AGJE01000018
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
2661
2736
+
Lys
TTT
[ENA]
¡û
>C131003237
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1739964
1740039
+
Lys
TTT
[Ensembl]
¡û
>C131003253
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1805426
1805501
+
Lys
TTT
[Ensembl]
¡û
>C131003270
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
3599695
3599620
-
Lys
TTT
[Ensembl]
¡û
>C131008536
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
2085222
2085147
-
Lys
TTT
[Ensembl]
¡û
>C131020956
HF563609
Bacillota
Tepidanaerobacter acetatoxydans Re1 [HF563609]
2735253
2735178
-
Lys
TTT
-
¡û
>W1610605878
LFSJ01000017
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
12182
12107
-
Lys
TTT
[ENA]
¡û
>W1610606720
LFTE01000083
Bacillota
Peptococcaceae bacterium DTU027 [LFTE]
243
168
-
Lys
TTT
[ENA]
¡û
>W1610606725
LFTE01000085
Bacillota
Peptococcaceae bacterium DTU027 [LFTE]
425
500
+
Lys
TTT
[ENA]
¡û
>W1610781386
LOCK01000001
Bacillota
Desulfitobacterium hafniense [LOCK]
73533
73608
+
Lys
TTT
[ENA]
¡û
>W1610781425
LOCK01000048
Bacillota
Desulfitobacterium hafniense [LOCK]
780
705
-
Lys
TTT
[ENA]
¡û
>W1710554128
FOIF01000010
Bacillota
Anaerobranca gottschalkii DSM 13577 [FOIF]
8274
8199
-
Lys
TTT
[ENA]
¡û
>W1710554132
FOIF01000021
Bacillota
Anaerobranca gottschalkii DSM 13577 [FOIF]
24240
24315
+
Lys
TTT
[ENA]
¡û
>W1710554150
FOIF01000048
Bacillota
Anaerobranca gottschalkii DSM 13577 [FOIF]
550
475
-
Lys
TTT
[ENA]
¡û
>W1710554155
FOIF01000064
Bacillota
Anaerobranca gottschalkii DSM 13577 [FOIF]
9155
9080
-
Lys
TTT
[ENA]
¡û
>W1710574810
FOYM01000024
Bacillota
Desulfoscipio geothermicus geothermicum [FOYM]
33570
33645
+
Lys
TTT
[ENA]
¡û
>W1710593513
FRDN01000006
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
279322
279247
-
Lys
TTT
[ENA]
¡û
>W1710593546
FRDN01000021
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
81135
81060
-
Lys
TTT
[ENA]
¡û
>W1710727165
LFSJ01000017
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
12182
12107
-
Lys
TTT
[ENA]
¡û
>W1710728007
LFTE01000083
Bacillota
Peptococcaceae bacterium DTU027 [LFTE]
243
168
-
Lys
TTT
[ENA]
¡û
>W1710728012
LFTE01000085
Bacillota
Peptococcaceae bacterium DTU027 [LFTE]
425
500
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK