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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.318048 (36 seq.)
>W1710863905
LMFM01000001
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
198135
198060
-
Trp
CCA
[ENA]
¡û
>W1710866240
LMHH01000003
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
463536
463611
+
Trp
CCA
[ENA]
¡û
>W1710867305
LMID01000015
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
329620
329695
+
Trp
CCA
[ENA]
¡û
>W1711072889
LSIA01000050
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
22700
22625
-
Trp
CCA
[ENA]
¡û
>W1711074447
LSJO01000019
Alphaproteobacteria
Sphingomonas sp. CCH9-F2 [LSJO]
9105
9030
-
Trp
CCA
[ENA]
¡û
>W1711386365
MEFG01000018
Alphaproteobacteria
Sphingomonas sp. SCN 67-18 [MEFG]
66856
66931
+
Trp
CCA
[ENA]
¡û
>W1711705054
MSQB01000026
Alphaproteobacteria
Novosphingobium panipatense [MSQB]
57990
57915
-
Trp
CCA
[ENA]
¡û
>C171047037
CP016306
Alphaproteobacteria
Sphingomonas sp. KC8 [CP016306]
1499833
1499908
+
Trp
CCA
-
¡û
>C171056590
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
1884702
1884627
-
Trp
CCA
-
¡û
>C171075863
CP018221
Alphaproteobacteria
Tardibacter chloracetimidivorans JJ-A5 [CP018221]
165739
165814
+
Trp
CCA
-
¡û
>W131213841
ATTI01000001
Alphaproteobacteria
Sphingomonas phyllosphaerae 5.2 [ATTI]
3257250
3257325
+
Trp
CCA
[ENA]
¡û
>WENV180311013
OBJT01086342
[OBJT] soil metagenome; soil
118
43
-
Trp
CCA
[ENA]
¢þ
>WENV181223056
OFDC01001537
[OFDC] hot springs metagenome; Water
2811
2736
-
Trp
CCA
[ENA]
¢þ
>WENV183673399
ORJL011272838
[ORJL] groundwater metagenome; groundwater
5
80
+
Leu
CAA
[ENA]
¢þ
>WENV183679845
ORMF010112100
[ORMF] groundwater metagenome; groundwater
192
267
+
Trp
CCA
[ENA]
¢þ
>WENV183740738
PJUF01008177
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
535
610
+
Trp
CCA
[ENA]
¢þ
>WENV170121467
CENM01028077
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
900
825
-
Trp
CCA
[ENA]
¢þ
>WENV170668208
LADL02001870
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
12606
12531
-
Trp
CCA
[ENA]
¢þ
>W141484924
JFYZ01000002
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
48131
48206
+
Trp
CCA
[ENA]
¡û
>C181081632
CP023449
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20 [CP023449]
682349
682274
-
Trp
CCA
-
¡û
>C191057034
CP028347
Alphaproteobacteria
Novosphingobium sp. THN1 [CP028347]
1694297
1694372
+
Trp
CCA
-
¡û
>C191144175
CP035501
Alphaproteobacteria
Sphingosinicella sp. BN140058 [CP035501]
4121307
4121232
-
Trp
CCA
-
¡û
>W141564477
JIAU01000006
Alphaproteobacteria
Sphingomonas sp. URHD0057 [JIAU]
271895
271970
+
Trp
CCA
[ENA]
¡û
>W1911411157
NWUF01000015
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
23496
23571
+
Trp
CCA
[ENA]
¡û
>W1911411949
NWVD01000001
Alphaproteobacteria
Sphingomonas ginsenosidimutans KACC 14949 [NWVD]
755158
755083
-
Trp
CCA
[ENA]
¡û
>W1810858406
QTJP01000001
Alphaproteobacteria
Sphingomonas crusticola MIMD3 [QTJP]
1128600
1128525
-
Trp
CCA
[ENA]
¡û
>W1511398357
JTDN01000001
Alphaproteobacteria
Croceibacterium mercuriale Coronado [JTDN]
1344358
1344283
-
Trp
CCA
[ENA]
¡û
>W121119237
ALVC01000203
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
9011
8936
-
Trp
CCA
[ENA]
¡û
>W1610592875
LDTB01000064
Alphaproteobacteria
Sphingomonas endophytica [LDTB]
53992
54067
+
Trp
CCA
[ENA]
¡û
>W1610726251
LMFM01000001
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
198135
198060
-
Trp
CCA
[ENA]
¡û
>W1610728586
LMHH01000003
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
463536
463611
+
Trp
CCA
[ENA]
¡û
>W1610729651
LMID01000015
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
329620
329695
+
Trp
CCA
[ENA]
¡û
>W1610912149
LSIA01000050
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
22700
22625
-
Trp
CCA
[ENA]
¡û
>W1610913752
LSJO01000019
Alphaproteobacteria
Sphingomonas sp. CCH9-F2 [LSJO]
9105
9030
-
Trp
CCA
[ENA]
¡û
>W1710514912
FNBI01000001
Alphaproteobacteria
Sphingomonas carotinifaciens S7-754 [FNBI]
354720
354795
+
Trp
CCA
[ENA]
¡û
>W1710712155
LDTB01000064
Alphaproteobacteria
Sphingomonas endophytica [LDTB]
53992
54067
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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