This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.318213 (38 seq.)
>WENV180241831
OBDI01015085
[OBDI] metagenome; diffuse fluid
329
405
+
Ile
GAT
[ENA]
¡û
>WENV180241880
OBDI01023264
[OBDI] metagenome; diffuse fluid
224
300
+
Ile
GAT
[ENA]
¡û
>WENV180277243
OBHV01140961
[OBHV] metagenome; water
132
56
-
Ile
GAT
[ENA]
¡û
>WENV180582131
OCMO01002269
[OCMO] metagenome; diffuse fluid
489
413
-
Ile
GAT
[ENA]
¡û
>WENV180583295
OCNB01024208
[OCNB] metagenome; diffuse fluid
231
307
+
Ile
GAT
[ENA]
¡û
>WENV180634482
OCRB01014166
[OCRB] metagenome; diffuse fluid
189
265
+
Ile
GAT
[ENA]
¡û
>WENV181293450
OFHG01003812
[OFHG] soil metagenome; Clay
1678
1602
-
Ile
GAT
[ENA]
¡û
>WENV181294162
OFHG01088328
[OFHG] soil metagenome; Clay
371
295
-
Ile
GAT
[ENA]
¡û
>WENV170014863
AZIC01001376
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
810
886
+
Ile
GAT
[ENA]
¡û
>WENV170623909
FUWD013172654
[FUWD] metagenome; unknown
379
455
+
Ile
GAT
[ENA]
¡û
>WENV170632199
FUWD013379334
[FUWD] metagenome; unknown
379
455
+
Ile
GAT
[ENA]
¡û
>WENV170656507
JTFO01019888
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
217
293
+
Ile
GAT
[ENA]
¡û
>WENV170658182
JTFP01066119
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
193
269
+
Ile
GAT
[ENA]
¡û
>WENV170658183
JTFP01066120
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
20
96
+
Ile
GAT
[ENA]
¡û
>WENV170693604
LGVC01027703
[LGVC] marine sediment metagenome; sample #5133, Elevator 3A push core 47, collected at Hydrate Ridge North during Jason II dive
897
821
-
Ile
GAT
[ENA]
¡û
>WENV170694020
LGVD01004762
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
925
849
-
Ile
GAT
[ENA]
¡û
>WENV170696196
LGVF01002119
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1255
1179
-
Ile
GAT
[ENA]
¡û
>W09111597
ABXD01000011
Campylobacterota
Sulfurimonas gotlandica GD 1 [ABXD]
216162
216086
-
Ile
GAT
[ENA]
¡û
>W2011544825
SDID01000048
Campylobacterota
Sulfurimonas sp. NW8N [SDID]
282
206
-
Ile
GAT
[ENA]
¡û
>C201092966
CP041166
Campylobacterota
Sulfurimonas sp. 1-1N [CP041166]
463938
464014
+
Ile
GAT
-
¡û
>C201092981
CP041166
Campylobacterota
Sulfurimonas sp. 1-1N [CP041166]
1859801
1859725
-
Ile
GAT
-
¡û
>C211052449
CP041165
Campylobacterota
Sulfurimonas sp. B2 [CP041165]
2207871
2207795
-
Ile
GAT
-
¡û
>C211052457
CP041165
Campylobacterota
Sulfurimonas sp. B2 [CP041165]
1528374
1528298
-
Ile
GAT
-
¡û
>C211052646
CP041406
Campylobacterota
Sulfurimonas paralvinellae GO25 [CP041406]
555389
555465
+
Ile
GAT
-
¡û
>C211052661
CP041406
Campylobacterota
Sulfurimonas paralvinellae GO25 [CP041406]
1998336
1998260
-
Ile
GAT
-
¡û
>C211065990
CP046072
Campylobacterota
Sulfurimonas sp. H1576 [CP046072]
2715067
2714991
-
Ile
GAT
-
¡û
>C211065994
CP046072
Campylobacterota
Sulfurimonas sp. H1576 [CP046072]
2016567
2016491
-
Ile
GAT
-
¡û
>C231194024
CP084578
Campylobacterota
Sulfurimonas sp. SWIR-19 [CP084578]
2381899
2381823
-
Ile
GAT
-
¡û
>C241040202
CP033720
Campylobacterota
Sulfurimonas sp. CVO [CP033720]
2133
2209
+
Ile
GAT
-
¡û
>C241040229
CP033720
Campylobacterota
Sulfurimonas sp. CVO [CP033720]
1282521
1282445
-
Ile
GAT
-
¡û
>C241042971
CP035534
Campylobacterota
Sulfurimonas hydrogeniphila NW10 [CP035534]
411114
411190
+
Ile
GAT
-
¡û
>C241042999
CP035534
Campylobacterota
Sulfurimonas hydrogeniphila NW10 [CP035534]
1611225
1611149
-
Ile
GAT
-
¡û
>C241081494
CP043617
Campylobacterota
Sulfurimonas lithotrophica GYSZ_1 [CP043617]
44327
44403
+
Ile
GAT
-
¡û
>C241081501
CP043617
Campylobacterota
Sulfurimonas lithotrophica GYSZ_1 [CP043617]
507055
507131
+
Ile
GAT
-
¡û
>C11119328
CP002205
Campylobacterota
Sulfurimonas autotrophica DSM 16294 [CP002205]
698264
698340
+
Ile
GAT
[Ensembl]
¡û
>C11119341
CP002205
Campylobacterota
Sulfurimonas autotrophica DSM 16294 [CP002205]
2120191
2120115
-
Ile
GAT
[Ensembl]
¡û
>W121004892
AFRZ01000001
Campylobacterota
Sulfurimonas gotlandica GD1 [AFRZ]
1226190
1226114
-
Ile
GAT
[ENA]
¡û
>WENV069498
AACY023769490
Marine microbial communities from Global Ocean Sampling (GOS)
1291
1367
+
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK