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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.318221 (15 seq.)
>W131208428
ATHJ01000094
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [ATHJ]
338469
338393
-
Pro
GGG
[ENA]
¡û
>C171038087
CP015381
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP015381]
1336065
1335989
-
Pro
GGG
-
¡û
>C171100893
CP019913
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP019913]
1336419
1336343
-
Pro
GGG
-
¡û
>WENV180346372
OBLN01076920
[OBLN] sediment metagenome; sediment
414
490
+
Pro
GGG
[ENA]
¡û
>WENV170006723
AMWB02047000
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
18377
18453
+
Pro
GGG
[ENA]
¡û
>WENV170007835
AMWB02160190
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
2432
2508
+
Pro
GGG
[ENA]
¡û
>WENV170697650
LGVF01168635
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
448
372
-
Pro
GGG
[ENA]
¡û
>W2110073899
CABEFZ010000093
Thermodesulfobacteriota
Desulfosarcina cetonica xyz [CABEFZ]
18096
18172
+
Pro
GGG
[ENA]
¡û
>C241004398
AP021874
Thermodesulfobacteriota
Desulfosarcina alkanivorans PL12 [AP021874]
6769070
6768994
-
Pro
GGG
-
¡û
>C241004502
AP021876
Thermodesulfobacteriota
Desulfosarcina ovata subsp. sediminis 28bB2T [AP021876]
7090188
7090112
-
Pro
GGG
-
¡û
>C241004552
AP021879
Thermodesulfobacteriota
Desulfosarcina ovata subsp. ovata oXyS1 [AP021879]
6665763
6665687
-
Pro
GGG
-
¡û
>W1610046119
BBCC01000121
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
18017
18093
+
Pro
GGG
[ENA]
¡û
>WENV069598
AACY023774466
Marine microbial communities from Global Ocean Sampling (GOS)
74
152
+
Pro
GGG
[ENA]
>W1710042915
BBCC01000121
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
18017
18093
+
Pro
GGG
[ENA]
¡û
>W1710600532
FUWN01000005
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [FUWN]
18812
18888
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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