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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.318362 (106 seq.)
>W131176039
ARJS01000045
Alphaproteobacteria
Saccharibacter floricola DSM 15669 [ARJS]
237462
237537
+
Ala
CGC
[ENA]
¡û
>W1711506183
MKWE01000027
Alphaproteobacteria
Rhodospirillales bacterium 70-18 [MKWE]
51210
51135
-
Ala
CGC
[ENA]
¡û
>C171074583
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
325730
325805
+
Ala
CGC
-
¡û
>C171074791
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
320803
320878
+
Ala
CGC
-
¡û
>WENV180018604
FSZX01000083
[FSZX] metagenome; soil
4483
4408
-
Ala
CGC
[ENA]
¡û
>WENV180343412
OBLK01013172
[OBLK] soil metagenome; Clay
440
365
-
Ala
CGC
[ENA]
¡û
>W08009503
ABPH01000005
Alphaproteobacteria
Gluconacetobacter diazotrophicus PAl 5 [ABPH]
77473
77548
+
Ala
CGC
[ENA]
¡û
>WENV181144984
OEHO01149938
[OEHO] metagenome; unknown
150
225
+
Ala
CGC
[ENA]
¡û
>WENV181193018
OEPS011353179
[OEPS] soil metagenome; soil
160
85
-
Ala
CGC
[ENA]
¡û
>W141224574
BAIN01000050
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
9231
9156
-
Ala
CGC
[ENA]
¡û
>W141229932
BASM01000016
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3257 [BASM]
145582
145657
+
Ala
CGC
[ENA]
¡û
>WENV170669499
LAHS01000342
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
53213
53138
-
Ala
CGC
[ENA]
¡û
>W141462257
JFHO01000067
Alphaproteobacteria
Acidiphilium sp. JA12-A1 [JFHO]
3095
3170
+
Ala
CGC
[ENA]
¡û
>C181071393
CP022699
Alphaproteobacteria
Acetobacter tropicalis BDGP1 [CP022699]
1796424
1796349
-
Ala
CGC
-
¡û
>W141731619
JNJH01000001
Alphaproteobacteria
Acidiphilium angustum ATCC 35903 [JNJH]
41474
41399
-
Ala
CGC
[ENA]
¡û
>W09105139
AAOO01000029
Alphaproteobacteria
Acidiphilium cryptum JF-5 [AAOO]
43808
43733
-
Ala
CGC
[ENA]
¡û
>C09106292
CP001189
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5; ATCC 49037 [CP001189]
2130778
2130853
+
Ala
CGC
[Ensembl]
¡û
>W1910913969
NHRY01000214
Alphaproteobacteria
Rhodopila globiformis DSM 161 [NHRY]
12210
12135
-
Ala
CGC
[ENA]
¡û
>C151004107
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
320750
320825
+
Ala
CGC
[Ensembl]
¡û
>W2010095979
BJMV01000003
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
173831
173906
+
Ala
CGC
[ENA]
¡û
>W2010100757
BJVR01000012
Alphaproteobacteria
Acetobacter tropicalis NBRC 16470 [BJVR]
69614
69689
+
Ala
CGC
[ENA]
¡û
>W2010100907
BJVV01000001
Alphaproteobacteria
Acetobacter orientalis NBRC 16606 [BJVV]
417442
417517
+
Ala
CGC
[ENA]
¡û
>W2010101302
BJWD01000014
Alphaproteobacteria
Gluconobacter thailandicus NBRC 100600 [BJWD]
27773
27698
-
Ala
CGC
[ENA]
¡û
>W2010103334
BJXQ01000007
Alphaproteobacteria
Acetobacter indonesiensis NBRC 16471 [BJXQ]
175982
176057
+
Ala
CGC
[ENA]
¡û
>W2010138349
BLJQ01000002
Alphaproteobacteria
Gluconobacter sp. Gdi [BLJQ]
44598
44523
-
Ala
CGC
[ENA]
¡û
>W2010324605
CACTIA010000005
Alphaproteobacteria
Acidiphilium sp. C61 [CACTIA]
1932659
1932584
-
Ala
CGC
[ENA]
¡û
>W2010575421
JAAVUP010000002
Alphaproteobacteria
Roseomonas oryzicola KCTC 22478 [JAAVUP]
400228
400153
-
Ala
CGC
[ENA]
¡û
>W2010593306
JABEQD010000013
Alphaproteobacteria
Gluconacetobacter aggeris LMG 27801 [JABEQD]
95268
95343
+
Ala
CGC
[ENA]
¡û
>W2010593585
JABEQJ010000007
Alphaproteobacteria
Gluconacetobacter sacchari LMG 19747 [JABEQJ]
42864
42939
+
Ala
CGC
[ENA]
¡û
>W2010593625
JABEQK010000002
Alphaproteobacteria
Gluconacetobacter takamatsuzukensis LMG 27800 [JABEQK]
393180
393105
-
Ala
CGC
[ENA]
¡û
>W2010593690
JABEQL010000011
Alphaproteobacteria
Gluconacetobacter tumulicola LMG 27725 [JABEQL]
59500
59575
+
Ala
CGC
[ENA]
¡û
>W2010593793
JABEQN010000015
Alphaproteobacteria
Gluconacetobacter sp. 1a LMG 1728 [JABEQN]
79279
79354
+
Ala
CGC
[ENA]
¡û
>W2010593863
JABEQP010000002
Alphaproteobacteria
Gluconacetobacter sp. 1c LMG 22058 [JABEQP]
23026
23101
+
Ala
CGC
[ENA]
¡û
>W2010651829
JABXXP010000576
Alphaproteobacteria
Nguyenibacter vanlangensis LMG 31431 [JABXXP]
1116
1041
-
Ala
CGC
[ENA]
¡û
>W2010781438
LMUJ01000063
Alphaproteobacteria
Acidisphaera sp. S103 [LMUJ]
89586
89511
-
Ala
CGC
[ENA]
¡û
>W2010782140
LMUY01000142
Alphaproteobacteria
Acidisphaera sp. L21 [LMUY]
46237
46162
-
Ala
CGC
[ENA]
¡û
>W2010966990
NHRY01000214
Alphaproteobacteria
Rhodopila globiformis DSM 161 [NHRY]
12210
12135
-
Ala
CGC
[ENA]
¡û
>W2011647032
SNVJ01000011
Alphaproteobacteria
Roseomonas sp. M0104 [SNVJ]
122709
122634
-
Ala
CGC
[ENA]
¡û
>W2011971678
VCDI01000006
Alphaproteobacteria
Acetobacteraceae bacterium KEBCLARHB70R [VCDI]
153782
153857
+
Ala
CGC
[ENA]
¡û
>W2012044046
VITL01000001
Alphaproteobacteria
Gluconacetobacter diazotrophicus PR 4 [VITL]
40330
40405
+
Ala
CGC
[ENA]
¡û
>W2012070919
VKJJ01000026
Alphaproteobacteria
Acetobacter tropicalis CS_006_W139 [VKJJ]
20968
20893
-
Ala
CGC
[ENA]
¡û
>W2012086263
VLTI01000005
Alphaproteobacteria
Acetobacter peroxydans ATCC 12874 [VLTI]
53073
52998
-
Ala
CGC
[ENA]
¡û
>W2012197318
VWPK01000032
Alphaproteobacteria
Rhodovastum atsumiense DSM 21279 [VWPK]
8435
8360
-
Ala
CGC
[ENA]
¡û
>W2012406729
WOSZ01000001
Alphaproteobacteria
Acetobacter peroxydans LMG 1635 [WOSZ]
52822
52747
-
Ala
CGC
[ENA]
¡û
>W2012457595
WVHN01000003
Alphaproteobacteria
Saccharibacter sp. EH70 [WVHN]
25531
25456
-
Ala
CGC
[ENA]
¡û
>W2110121025
CAJQZK010000005
Alphaproteobacteria
Acidocella sp. C78 [CAJQZK]
70139
70214
+
Ala
CGC
[ENA]
¡û
>W2110121070
CAJQZK010000066
Alphaproteobacteria
Acidocella sp. C78 [CAJQZK]
70139
70214
+
Ala
CGC
[ENA]
¡û
>W2110137920
JAAEDH010000002
Alphaproteobacteria
Roseomonas arctica LMG 28251 [JAAEDH]
253599
253674
+
Ala
CGC
[ENA]
¡û
>W2110249651
JACRVV010000012
Alphaproteobacteria
Gluconobacter sp. P5B12 [JACRVV]
21814
21889
+
Ala
CGC
[ENA]
¡û
>W2110249724
JACRVX010000002
Alphaproteobacteria
Gluconobacter sp. P5H9_d [JACRVX]
44751
44676
-
Ala
CGC
[ENA]
¡û
>W2110251219
JACSIQ010000013
Alphaproteobacteria
Gluconobacter sp. P1D12_c [JACSIQ]
44686
44611
-
Ala
CGC
[ENA]
¡û
>W2110276082
JACVVW010000019
Alphaproteobacteria
Acidiphilium multivorum LMS [JACVVW]
21259
21334
+
Ala
CGC
[ENA]
¡û
>W2110443106
JAERLD010000009
Alphaproteobacteria
Gluconobacter cerinus Dm-75 [JAERLD]
44648
44573
-
Ala
CGC
[ENA]
¡û
>W2110443225
JAERLG010000002
Alphaproteobacteria
Gluconobacter cerinus Dm-69 [JAERLG]
57098
57023
-
Ala
CGC
[ENA]
¡û
>W2110443339
JAERLI010000017
Alphaproteobacteria
Gluconobacter cerinus Dm-13 [JAERLI]
44610
44535
-
Ala
CGC
[ENA]
¡û
>W2110443591
JAERLN010000013
Alphaproteobacteria
Gluconobacter cerinus Dm-23 [JAERLN]
60710
60635
-
Ala
CGC
[ENA]
¡û
>W2110482023
JAFEJB010000001
Alphaproteobacteria
Gluconobacter cerinus FLW-1 [JAFEJB]
1320977
1321052
+
Ala
CGC
[ENA]
¡û
>W2110520931
JAFVMH010000001
Alphaproteobacteria
Acetobacter sp. TBRC 12339 [JAFVMH]
67774
67699
-
Ala
CGC
[ENA]
¡û
>W2110581216
JAGYFJ010000005
Alphaproteobacteria
Ameyamaea chiangmaiensis TBRC 6 [JAGYFJ]
49347
49422
+
Ala
CGC
[ENA]
¡û
>W2110663785
JAHYBZ010000003
Alphaproteobacteria
Roseomonas sp. HJA6 [JAHYBZ]
621842
621917
+
Ala
CGC
[ENA]
¡û
>W2110669429
JAIEUM010000001
Alphaproteobacteria
Acetobacter sp. TBRC 12305 [JAIEUM]
67774
67699
-
Ala
CGC
[ENA]
¡û
>C231047262
CP041716
Alphaproteobacteria
Acidiphilium multivorum JZ-6 [CP041716]
1858124
1858049
-
Ala
CGC
-
¡û
>C231245130
CP087719
Alphaproteobacteria
Roseomonas sp. OT10 [CP087719]
5129886
5129961
+
Ala
CGC
-
¡û
>C231508273
CP107052
Alphaproteobacteria
Acetobacteraceae bacterium (ex Diaphorina citri) [CP107052]
1794009
1794084
+
Ala
CGC
-
¡û
>W2130010169
JAAGBC010000046
Alphaproteobacteria
Roseomonas hellenica LMG 31524 [JAAGBC]
29007
29082
+
Ala
CGC
[ENA]
¡û
>W2310007681
BAPG01000064
Alphaproteobacteria
Acetobacter nitrogenifigens DSM 23921 = NBRC 105050 LMG 23498 [BAPG]
46595
46670
+
Ala
CGC
[ENA]
¡û
>W2310007771
BAPI01000032
Alphaproteobacteria
Acetobacter orientalis NRIC 0481 [BAPI]
49130
49205
+
Ala
CGC
[ENA]
¡û
>W2310008049
BAPQ01002148
Alphaproteobacteria
Acidiphilium acidophilum DSM 700 [BAPQ]
62
137
+
Ala
CGC
[ENA]
¡û
>W2310008574
BAQD01000003
Alphaproteobacteria
Saccharibacter floricola DSM 15669 [BAQD]
142009
142084
+
Ala
CGC
[ENA]
¡û
>W2310008679
BAQF01000012
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BAQF]
24700
24775
+
Ala
CGC
[ENA]
¡û
>W2310008910
BAQL01001016
Alphaproteobacteria
Gluconacetobacter liquefaciens NRIC 0522 [BAQL]
5724
5799
+
Ala
CGC
[ENA]
¡û
>W2310009046
BAQP01000197
Alphaproteobacteria
Gluconacetobacter sacchari DSM 12717 [BAQP]
42820
42895
+
Ala
CGC
[ENA]
¡û
>W2310009554
BARB01000115
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BARB]
64373
64448
+
Ala
CGC
[ENA]
¡û
>W1511271203
JOKM01000106
Alphaproteobacteria
Acetobacter tropicalis DmCS_006 [JOKM]
67475
67550
+
Ala
CGC
[ENA]
¡û
>W1511620437
LCTG01000002
Alphaproteobacteria
Gluconobacter oxydans NL71 [LCTG]
628313
628238
-
Ala
CGC
[ENA]
¡û
>C161095996
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
849910
849985
+
Ala
CGC
-
¡û
>W121034288
AHKI01000084
Alphaproteobacteria
Gluconobacter thailandicus WSH-003 [AHKI]
53723
53648
-
Ala
CGC
[ENA]
¡û
>W121123432
BADZ01000014
Alphaproteobacteria
Gluconobacter frateurii NBRC 101659 [BADZ]
53372
53447
+
Ala
CGC
[ENA]
¡û
>W1610040664
BALE01000031
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
85371
85296
-
Ala
CGC
[ENA]
¡û
>W1610040736
BAMV01000006
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
24281
24206
-
Ala
CGC
[ENA]
¡û
>W1610040793
BAMW01000026
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
106802
106877
+
Ala
CGC
[ENA]
¡û
>W1610040849
BAMX01000026
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
2052
2127
+
Ala
CGC
[ENA]
¡û
>W1610040975
BANA01000266
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
1733
1808
+
Ala
CGC
[ENA]
¡û
>W1610040993
BANB01000055
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
793
868
+
Ala
CGC
[ENA]
¡û
>W1610041217
BANH01000017
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
145538
145613
+
Ala
CGC
[ENA]
¡û
>C131009979
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
1027703
1027628
-
Ala
CGC
[Ensembl]
¡û
>W1610624323
LHZH01000130
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
22775
22850
+
Ala
CGC
[ENA]
¡û
>W1610624376
LHZI01001715
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
2448
2523
+
Ala
CGC
[ENA]
¡û
>W1610624394
LHZJ01000073
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
22774
22849
+
Ala
CGC
[ENA]
¡û
>W1610624614
LHZO01000050
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
46540
46465
-
Ala
CGC
[ENA]
¡û
>W1610624799
LHZS01000085
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
29170
29095
-
Ala
CGC
[ENA]
¡û
>W1710037862
BALE01000031
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
85371
85296
-
Ala
CGC
[ENA]
¡û
>W1710037934
BAMV01000006
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
24281
24206
-
Ala
CGC
[ENA]
¡û
>W1710037991
BAMW01000026
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
106802
106877
+
Ala
CGC
[ENA]
¡û
>W1710038047
BAMX01000026
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
2052
2127
+
Ala
CGC
[ENA]
¡û
>W1710038173
BANA01000266
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
1733
1808
+
Ala
CGC
[ENA]
¡û
>W1710038191
BANB01000055
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
793
868
+
Ala
CGC
[ENA]
¡û
>W1710038415
BANH01000017
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
145538
145613
+
Ala
CGC
[ENA]
¡û
>W1710597389
FTNE01000004
Alphaproteobacteria
Acidiphilium rubrum [FTNE]
41095
41020
-
Ala
CGC
[ENA]
¡û
>W1710624329
JOMO01000005
Alphaproteobacteria
Acetobacter orientalis [JOMO]
24574
24499
-
Ala
CGC
[ENA]
¡û
>W1710624465
JOOY01000020
Alphaproteobacteria
Acetobacter orientalis [JOOY]
20451
20526
+
Ala
CGC
[ENA]
¡û
>W1710624533
JOOZ01000219
Alphaproteobacteria
Acetobacter senegalensis [JOOZ]
4723
4648
-
Ala
CGC
[ENA]
¡û
>W1710624817
JOPH01000072
Alphaproteobacteria
Gluconobacter sp. DsW_058 [JOPH]
61840
61915
+
Ala
CGC
[ENA]
¡û
>W1710624942
JOPK01000042
Alphaproteobacteria
Acetobacter orientalis [JOPK]
85179
85254
+
Ala
CGC
[ENA]
¡û
>W1710755441
LHZH01000130
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
22775
22850
+
Ala
CGC
[ENA]
¡û
>W1710755732
LHZO01000050
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
46540
46465
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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