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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319040 (58 seq.)
>WENV180197752
OBAB01011011
[OBAB] human gut metagenome; faeces
109
182
+
Gly
GCC
[ENA]
¢þ
>WENV180445826
OBXA01029979
[OBXA] human gut metagenome; faeces
592
664
+
Gly
GCC
[ENA]
¢þ
>WENV180446602
OBXC01000389
[OBXC] human gut metagenome; faeces
24649
24722
+
Gly
GCC
[ENA]
¢þ
>WENV180446658
OBXC01000472
[OBXC] human gut metagenome; faeces
18
91
+
Gly
GCC
[ENA]
¢þ
>WENV180446744
OBXC01000981
[OBXC] human gut metagenome; faeces
428
356
-
Gly
GCC
[ENA]
¢þ
>WENV180446848
OBXC01001830
[OBXC] human gut metagenome; faeces
9057
8985
-
Gly
GCC
[ENA]
¢þ
>WENV180446964
OBXC01005122
[OBXC] human gut metagenome; faeces
81
153
+
Gly
GCC
[ENA]
¢þ
>WENV180455077
OBXO01000355
[OBXO] human gut metagenome; faeces
30641
30568
-
Gly
GCC
[ENA]
¢þ
>WENV180455122
OBXO01000415
[OBXO] human gut metagenome; faeces
35732
35660
-
Gly
GCC
[ENA]
¢þ
>WENV180455395
OBXO01002680
[OBXO] human gut metagenome; faeces
373
445
+
Gly
GCC
[ENA]
¢þ
>WENV180455409
OBXO01002888
[OBXO] human gut metagenome; faeces
5242
5169
-
Gly
GCC
[ENA]
¢þ
>WENV180455604
OBXO01014500
[OBXO] human gut metagenome; faeces
644
716
+
Gly
GCC
[ENA]
¢þ
>WENV182409567
OIFJ01000017
[OIFJ] human gut metagenome; stool
79459
79532
+
Gly
GCC
[ENA]
¢þ
>WENV182409646
OIFJ01000072
[OIFJ] human gut metagenome; stool
2
75
+
Gly
GCC
[ENA]
¢þ
>WENV182409860
OIFJ01000908
[OIFJ] human gut metagenome; stool
301
373
+
Gly
GCC
[ENA]
¢þ
>WENV182426136
OIHN01013590
[OIHN] human gut metagenome; human gut
151
79
-
Gly
GCC
[ENA]
¢þ
>WENV182961590
OKWL01000077
[OKWL] human gut metagenome; stool
122040
122112
+
Gly
GCC
[ENA]
¢þ
>WENV182961608
OKWL01000094
[OKWL] human gut metagenome; stool
11337
11410
+
Gly
GCC
[ENA]
¢þ
>WENV182961849
OKWL01000696
[OKWL] human gut metagenome; stool
3
75
+
Gly
GCC
[ENA]
¢þ
>WENV182962539
OKWN01003137
[OKWN] human gut metagenome; stool
1608
1536
-
Gly
GCC
[ENA]
¢þ
>WENV182962574
OKWN01006461
[OKWN] human gut metagenome; stool
787
714
-
Gly
GCC
[ENA]
¢þ
>WENV182965820
OKWT01000317
[OKWT] human gut metagenome; stool
6766
6839
+
Gly
GCC
[ENA]
¢þ
>WENV182965841
OKWT01000449
[OKWT] human gut metagenome; stool
76
148
+
Gly
GCC
[ENA]
¢þ
>WENV183173459
OLPD01006879
[OLPD] human gut metagenome; faeces
669
741
+
Gly
GCC
[ENA]
¢þ
>WENV183500458
OMGQ01016440
[OMGQ] human gut metagenome; human gut
1112
1040
-
Gly
GCC
[ENA]
¢þ
>WENV183589737
OOCW01004295
[OOCW] human gut metagenome; human gut
1631
1558
-
Gly
GCC
[ENA]
¢þ
>C191128871
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
728665
728737
+
Gly
GCC
-
¡û
>C191128883
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
822620
822693
+
Gly
GCC
-
¡û
>C191128899
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
1430974
1431046
+
Gly
GCC
-
¡û
>C191128923
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
1909575
1909648
+
Gly
GCC
-
¡û
>W1810071096
PEDL01000011
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
30319
30247
-
Gly
GCC
[ENA]
¡û
>W1810071109
PEDL01000018
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
37789
37861
+
Gly
GCC
[ENA]
¡û
>W1810071114
PEDL01000024
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
27424
27351
-
Gly
GCC
[ENA]
¡û
>W1810071135
PEDL01000048
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
866
938
+
Gly
GCC
[ENA]
¡û
>W10118881
ADVF01000018
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
65549
65622
+
Gly
GCC
[ENA]
¡û
>W10118886
ADVF01000020
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
5517
5589
+
Gly
GCC
[ENA]
¡û
>W10118904
ADVF01000029
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
8423
8495
+
Gly
GCC
[ENA]
¡û
>W10118942
ADVF01000084
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
1030
1102
+
Gly
GCC
[ENA]
¡û
>C11105516
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
82856
82928
+
Gly
GCC
[Ensembl]
¡û
>C11105527
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
161725
161797
+
Gly
GCC
[Ensembl]
¡û
>C11105542
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
737624
737696
+
Gly
GCC
[Ensembl]
¡û
>C11105566
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
1299560
1299633
+
Gly
GCC
[Ensembl]
¡û
>W1510725194
CXYW01000006
Bacillota
Niameybacter massiliensis mt14 [CXYW]
347
420
+
Gly
GCC
[ENA]
¡û
>W1510725285
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
1570637
1570564
-
Gly
GCC
[ENA]
¡û
>W11125053
ADVF01000018
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
65549
65622
+
Gly
GCC
[ENA]
¡û
>W11125058
ADVF01000020
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
5517
5589
+
Gly
GCC
[ENA]
¡û
>W11125076
ADVF01000029
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
8423
8495
+
Gly
GCC
[ENA]
¡û
>W11125114
ADVF01000084
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
1030
1102
+
Gly
GCC
[ENA]
¡û
>W1610046303
BBCG01000002
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
134794
134721
-
Gly
GCC
[ENA]
¡û
>W1610046315
BBCG01000022
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
1052
979
-
Gly
GCC
[ENA]
¡û
>W1610046330
BBCG01000073
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
3541
3468
-
Gly
GCC
[ENA]
¡û
>W1610046362
BBCG01000133
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
939
866
-
Gly
GCC
[ENA]
¡û
>W1610046365
BBCG01000147
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
560
487
-
Gly
GCC
[ENA]
¡û
>W1710043099
BBCG01000002
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
134794
134721
-
Gly
GCC
[ENA]
¡û
>W1710043111
BBCG01000022
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
1052
979
-
Gly
GCC
[ENA]
¡û
>W1710043126
BBCG01000073
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
3541
3468
-
Gly
GCC
[ENA]
¡û
>W1710043158
BBCG01000133
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
939
866
-
Gly
GCC
[ENA]
¡û
>W1710043161
BBCG01000147
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
560
487
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK