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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319063 (94 seq.)
>W131170154
ARFI01000003
Bacillota
Paenibacillus sp. HW567 [ARFI]
2149
2224
+
His
GTG
[ENA]
¡û
>W1711167372
LVWH01000094
Bacillota
Paenibacillus sp. P3E [LVWH]
1412
1487
+
His
GTG
[ENA]
¡û
>W1711167506
LVWI01000090
Bacillota
Paenibacillus helianthi P26E [LVWI]
13733
13658
-
His
GTG
[ENA]
¡û
>W1711169262
LVYY01000033
Bacillota
Paenibacillus sp. P32E [LVYY]
13753
13678
-
His
GTG
[ENA]
¡û
>W1711169368
LVYZ01000039
Bacillota
Paenibacillus sp. P46E [LVYZ]
109297
109222
-
His
GTG
[ENA]
¡û
>W1711309533
MAQW01000030
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
1126
1201
+
His
GTG
[ENA]
¡û
>W1711499543
MKQK01000053
Bacillota
Paenibacillus odorifer [MKQK]
712
787
+
His
GTG
[ENA]
¡û
>W1711499603
MKQL01000009
Bacillota
Paenibacillus odorifer [MKQL]
746
821
+
His
GTG
[ENA]
¡û
>W1711499685
MKQM01000051
Bacillota
Paenibacillus odorifer [MKQM]
744
819
+
His
GTG
[ENA]
¡û
>W1711499734
MKQN01000013
Bacillota
Paenibacillus odorifer [MKQN]
143785
143710
-
His
GTG
[ENA]
¡û
>W1711499820
MKQO01000057
Bacillota
Paenibacillus odorifer [MKQO]
681
756
+
His
GTG
[ENA]
¡û
>W1711499867
MKQP01000011
Bacillota
Paenibacillus odorifer [MKQP]
730
805
+
His
GTG
[ENA]
¡û
>W1711632810
MPTB01000154
Bacillota
Paenibacillus borealis [MPTB]
291
216
-
His
GTG
[ENA]
¡û
>W1711632811
MPTB01000154
Bacillota
Paenibacillus borealis [MPTB]
169
94
-
His
GTG
[ENA]
¡û
>W1711632844
MPTC01000028
Bacillota
Paenibacillus odorifer [MPTC]
325
400
+
His
GTG
[ENA]
¡û
>W1711632912
MPTD01000016
Bacillota
Paenibacillus odorifer [MPTD]
216472
216397
-
His
GTG
[ENA]
¡û
>W1711632958
MPTE01000009
Bacillota
Paenibacillus odorifer [MPTE]
240449
240374
-
His
GTG
[ENA]
¡û
>W1711633029
MPTF01000008
Bacillota
Paenibacillus odorifer [MPTF]
730
805
+
His
GTG
[ENA]
¡û
>W1711633097
MPTG01000021
Bacillota
Paenibacillus odorifer [MPTG]
112369
112294
-
His
GTG
[ENA]
¡û
>W1711633171
MPTH01000044
Bacillota
Paenibacillus odorifer [MPTH]
723
798
+
His
GTG
[ENA]
¡û
>W1711633229
MPTI01000021
Bacillota
Paenibacillus odorifer [MPTI]
721
796
+
His
GTG
[ENA]
¡û
>W1711633285
MPTJ01000016
Bacillota
Paenibacillus odorifer [MPTJ]
720
795
+
His
GTG
[ENA]
¡û
>W1711633361
MPTK01000020
Bacillota
Paenibacillus odorifer [MPTK]
744
819
+
His
GTG
[ENA]
¡û
>W1711633419
MPTL01000039
Bacillota
Paenibacillus odorifer [MPTL]
57563
57488
-
His
GTG
[ENA]
¡û
>W1711633478
MPTM01000021
Bacillota
Paenibacillus odorifer [MPTM]
115630
115555
-
His
GTG
[ENA]
¡û
>W1711633546
MPTN01000023
Bacillota
Paenibacillus odorifer [MPTN]
722
797
+
His
GTG
[ENA]
¡û
>W1711633594
MPTO01000006
Bacillota
Paenibacillus odorifer [MPTO]
721
796
+
His
GTG
[ENA]
¡û
>W1711633661
MPTP01000008
Bacillota
Paenibacillus odorifer [MPTP]
228628
228553
-
His
GTG
[ENA]
¡û
>W1711633726
MPTQ01000015
Bacillota
Paenibacillus odorifer [MPTQ]
168105
168030
-
His
GTG
[ENA]
¡û
>W1711633802
MPTR01000015
Bacillota
Paenibacillus odorifer [MPTR]
168026
167951
-
His
GTG
[ENA]
¡û
>W1711633860
MPTS01000008
Bacillota
Paenibacillus odorifer [MPTS]
251683
251608
-
His
GTG
[ENA]
¡û
>W1711633917
MPTT01000009
Bacillota
Paenibacillus odorifer [MPTT]
210695
210620
-
His
GTG
[ENA]
¡û
>W1711633988
MPTU01000004
Bacillota
Paenibacillus odorifer [MPTU]
296204
296129
-
His
GTG
[ENA]
¡û
>W1711634057
MPTV01000007
Bacillota
Paenibacillus odorifer [MPTV]
500
575
+
His
GTG
[ENA]
¡û
>W1711634159
MPTW01000064
Bacillota
Paenibacillus odorifer [MPTW]
170
95
-
His
GTG
[ENA]
¡û
>W1711636447
MPVM01000010
Bacillota
Paenibacillus odorifer [MPVM]
1284
1359
+
His
GTG
[ENA]
¡û
>W1711636621
MPVO01000004
Bacillota
Paenibacillus odorifer [MPVO]
509898
509823
-
His
GTG
[ENA]
¡û
>W1711636692
MPVP01000235
Bacillota
Paenibacillus odorifer [MPVP]
721
796
+
His
GTG
[ENA]
¡û
>W1711677355
MRTL01000023
Bacillota
Paenibacillus sp. FSL H8-0259 [MRTL]
108561
108486
-
His
GTG
[ENA]
¡û
>W1711678039
MRTW01000129
Bacillota
Paenibacillus sp. FSL R7-0333 [MRTW]
362
287
-
His
GTG
[ENA]
¡û
>W1711678076
MRTX01000029
Bacillota
Paenibacillus sp. FSL R7-0337 [MRTX]
187
262
+
His
GTG
[ENA]
¡û
>W1711678136
MRTY01000023
Bacillota
Paenibacillus sp. FSL R7-0273 [MRTY]
493
566
+
His
GTG
[ENA]
¡û
>W141072351
ASPS01000083
Bacillota
Paenibacillus sp. FSL R7-269 [ASPS]
10877
10802
-
His
GTG
[ENA]
¡û
>W141072352
ASPS01000083
Bacillota
Paenibacillus sp. FSL R7-269 [ASPS]
10753
10678
-
His
GTG
[ENA]
¡û
>W141072557
ASPV01000092
Bacillota
Paenibacillus sp. FSL H8-237 [ASPV]
229127
229052
-
His
GTG
[ENA]
¡û
>W141072734
ASPX01000107
Bacillota
Paenibacillus sp. FSL R7-277 [ASPX]
368
443
+
His
GTG
[ENA]
¡û
>W141072735
ASPX01000107
Bacillota
Paenibacillus sp. FSL R7-277 [ASPX]
492
567
+
His
GTG
[ENA]
¡û
>W141263398
CCDG010000006
Bacillota
Paenibacillus camerounensis G4 [CCDG]
212330
212257
-
His
GTG
[ENA]
¡û
>C181054861
CP021965
Bacillota
Paenibacillus odorifer CBA7130 [CP021965]
5896409
5896334
-
His
GTG
-
¡û
>C151046435
CP009241
Bacillota
Paenibacillus sp. FSL H7-0357 [CP009241]
6595784
6595709
-
His
GTG
[Ensembl]
¡û
>C151046436
CP009241
Bacillota
Paenibacillus sp. FSL H7-0357 [CP009241]
6595662
6595587
-
His
GTG
[Ensembl]
¡û
>C151047489
CP009279
Bacillota
Paenibacillus sp. FSL H7-0737 [CP009279]
5827721
5827646
-
His
GTG
[Ensembl]
¡û
>C151047575
CP009280
Bacillota
Paenibacillus sp. FSL P4-0081 [CP009280]
7400126
7400051
-
His
GTG
[Ensembl]
¡û
>C151047662
CP009281
Bacillota
Paenibacillus sp. FSL R5-0345 [CP009281]
5840782
5840707
-
His
GTG
[Ensembl]
¡û
>C151047749
CP009282
Bacillota
Paenibacillus sp. FSL R5-0912 [CP009282]
6721977
6721902
-
His
GTG
[Ensembl]
¡û
>C151047835
CP009283
Bacillota
Paenibacillus sp. FSL R7-0273 [CP009283]
6311163
6311090
-
His
GTG
[Ensembl]
¡û
>C151047920
CP009284
Bacillota
Paenibacillus sp. FSL R7-0331 [CP009284]
6063494
6063421
-
His
GTG
[Ensembl]
¡û
>C151048003
CP009285
Bacillota
Paenibacillus borealis DSM 13188 [CP009285]
7154960
7154885
-
His
GTG
[Ensembl]
¡û
>C151048004
CP009285
Bacillota
Paenibacillus borealis DSM 13188 [CP009285]
7154836
7154761
-
His
GTG
[Ensembl]
¡û
>C151048176
CP009287
Bacillota
Paenibacillus graminis DSM 15220 [CP009287]
6196513
6196438
-
His
GTG
[Ensembl]
¡û
>C151050872
CP009428
Bacillota
Paenibacillus odorifer DSM 15391 [CP009428]
5914213
5914138
-
His
GTG
[Ensembl]
¡û
>C151104431
LN831776
Bacillota
Paenibacillus riograndensis SBR5 [LN831776]
6863388
6863313
-
His
GTG
[Ensembl]
¡û
>W2010273861
CABKUZ020000009
Bacillota
Paenibacillus ihuae [CABKUZ]
76555
76480
-
His
GTG
[ENA]
¡û
>W2010609651
JABMKX010000026
Bacillota
Paenibacillus tritici LMG 29502 [JABMKX]
1188
1263
+
His
GTG
[ENA]
¡û
>W2010609652
JABMKX010000026
Bacillota
Paenibacillus tritici LMG 29502 [JABMKX]
1312
1387
+
His
GTG
[ENA]
¡û
>W2010640441
JABWCS010000180
Bacillota
Paenibacillus sp. JW14 [JABWCS]
37662
37587
-
His
GTG
[ENA]
¡û
>W2010640442
JABWCS010000180
Bacillota
Paenibacillus sp. JW14 [JABWCS]
37540
37465
-
His
GTG
[ENA]
¡û
>W2011695156
STGQ01000001
Bacillota
Paenibacillus sp. YH-JAE5 [STGQ]
624
697
+
His
GTG
[ENA]
¡û
>W2012150960
VTZR01000011
Bacillota
B2(2019) [VTZR]
282234
282160
-
His
GTG
[ENA]
¡û
>W2012328469
WHOB01000098
Bacillota
Paenibacillus sp. LMG 31459 [WHOB]
511
586
+
His
GTG
[ENA]
¡û
>W2110029311
BMKR01000001
Bacillota
Paenibacillus albidus CGMCC 1.16134 [BMKR]
383730
383655
-
His
GTG
[ENA]
¡û
>W2110172512
JABCUD010000027
Gammaproteobacteria
Acinetobacter sp. CUI P1 [JABCUD]
1219
1294
+
His
GTG
[ENA]
¡û
>W2110200311
JACBYI010000070
Bacillota
Paenibacillus sp. S150 [JACBYI]
909
984
+
His
GTG
[ENA]
¡û
>W2110540359
JAGGLV010000031
Bacillota
Paenibacillus silagei DSM 101953 [JAGGLV]
80740
80665
-
His
GTG
[ENA]
¡û
>W2110540360
JAGGLV010000031
Bacillota
Paenibacillus silagei DSM 101953 [JAGGLV]
80616
80541
-
His
GTG
[ENA]
¡û
>W2110541655
JAGGNS010000090
Bacillota
Paenibacillus albidus ISL-16 [JAGGNS]
18383
18308
-
His
GTG
[ENA]
¡û
>C201309819
LR698998
Bacillota
Paenibacillus odorifer [LR698998]
5896409
5896334
-
His
GTG
-
¡û
>C211281227
CP070969
Bacillota
Paenibacillus sp. TB2019 [CP070969]
5417184
5417109
-
His
GTG
-
¡û
>C211321571
CP073365
Bacillota
Paenibacillus tritici PH55-1 [CP073365]
6612521
6612446
-
His
GTG
-
¡û
>C211321572
CP073365
Bacillota
Paenibacillus tritici PH55-1 [CP073365]
6612397
6612322
-
His
GTG
-
¡û
>C231032936
CP026029
Bacillota
Paenibacillus sp. PK3_47 [CP026029]
1794477
1794403
-
His
GTG
-
¡û
>C241129254
CP048429
Bacillota
Paenibacillus jilunlii KACC 16679 [CP048429]
903726
903651
-
His
GTG
-
¡û
>C241265481
CP126095
Bacillota
Paenibacillus sp. G2S3 [CP126095]
5797665
5797590
-
His
GTG
-
¡û
>W1510562437
CTED01000582
Bacillota
Paenibacillus ihuae GD6 [CTED]
8229
8154
-
His
GTG
[ENA]
¡û
>W1511430206
JUEI01000249
Bacillota
Paenibacillus sp. IHB B 3415 [JUEI]
543
468
-
His
GTG
[ENA]
¡û
>W1610632585
LIPY01000102
Bacillota
Paenibacillus jilunlii [LIPY]
96247
96172
-
His
GTG
[ENA]
¡û
>W1611057190
MAQW01000030
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
1126
1201
+
His
GTG
[ENA]
¡û
>W1710518303
FNDX01000048
Bacillota
Paenibacillus typhae [FNDX]
1144
1219
+
His
GTG
[ENA]
¡û
>W1710521569
FNGM01000009
Bacillota
Paenibacillus jilunlii [FNGM]
266538
266463
-
His
GTG
[ENA]
¡û
>W1710521570
FNGM01000009
Bacillota
Paenibacillus jilunlii [FNGM]
266415
266340
-
His
GTG
[ENA]
¡û
>W1710659054
JXKD01000001
Bacillota
Enterococcus aquimarinus [JXKD]
4
78
+
His
GTG
[ENA]
¡û
>W1710705093
LCZJ02000033
Bacillota
Paenibacillus etheri [LCZJ]
694759
694684
-
His
GTG
[ENA]
¡û
>W1710766971
LIPY01000102
Bacillota
Paenibacillus jilunlii [LIPY]
96247
96172
-
His
GTG
[ENA]
¡û
>W1710768408
LIRB01000135
Bacillota
Paenibacillus riograndensis [LIRB]
1606
1681
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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