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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319206 (73 seq.)
>W1711430698
MIJG01000001
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
1302489
1302564
+
Ala
TGC
[ENA]
¡û
>W1711430704
MIJG01000001
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
676567
676492
-
Ala
TGC
[ENA]
¡û
>W1711430709
MIJG01000001
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
3521
3446
-
Ala
TGC
[ENA]
¡û
>W1712110290
NJGU01000026
Betaproteobacteria
Herbaspirillum robiniae HZ10 [NJGU]
3637
3562
-
Ala
TGC
[ENA]
¡û
>C171094241
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
2369715
2369640
-
Ala
TGC
-
¡û
>C171094243
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
2275297
2275222
-
Ala
TGC
-
¡û
>W131046091
AMSB01000038
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os34 [AMSB]
2208
2283
+
Ala
TGC
[ENA]
¡û
>WENV180026685
FTIU01022301
[FTIU] metagenome; soil
75
150
+
Ala
TGC
[ENA]
¢þ
>WENV180026741
FTIU01067306
[FTIU] metagenome; soil
1600
1525
-
Ala
TGC
[ENA]
¢þ
>WENV180032705
FTKD01000020
[FTKD] metagenome; soil
111754
111679
-
Ala
TGC
[ENA]
¢þ
>WENV180032844
FTKD01001697
[FTKD] metagenome; soil
2366
2291
-
Ala
TGC
[ENA]
¢þ
>WENV180033122
FTKD01411761
[FTKD] metagenome; soil
24093
24168
+
Ala
TGC
[ENA]
¢þ
>W141003853
AEEC02000072
Betaproteobacteria
Herbaspirillum frisingense GSF30 [AEEC]
3256
3181
-
Ala
TGC
[ENA]
¡û
>WENV180247212
OBEQ010006617
[OBEQ] groundwater metagenome; groundwater
693
768
+
Ala
TGC
[ENA]
¢þ
>WENV180253870
OBEQ010580943
[OBEQ] groundwater metagenome; groundwater
422
497
+
Ala
TGC
[ENA]
¢þ
>WENV180257176
OBEQ010887074
[OBEQ] groundwater metagenome; groundwater
794
719
-
Ala
TGC
[ENA]
¢þ
>WENV180258297
OBEQ010993812
[OBEQ] groundwater metagenome; groundwater
158
83
-
Ala
TGC
[ENA]
¢þ
>WENV180304342
OBJI01005154
[OBJI] soil metagenome; soil
260
335
+
Ala
TGC
[ENA]
¢þ
>WENV181149493
OEHT01094354
[OEHT] human metagenome; G_DNA_Stool
227
302
+
Ala
TGC
[ENA]
¢þ
>WENV181369597
OFQP01010288
[OFQP] freshwater metagenome; Freshwater Lake
905
830
-
Ala
TGC
[ENA]
¢þ
>WENV181451900
OGDY01030201
[OGDY] metagenome; Human gut stool
17
92
+
Ala
TGC
[ENA]
¢þ
>WENV181836760
OGVJ01027572
[OGVJ] freshwater metagenome; freshwater
573
498
-
Ala
TGC
[ENA]
¢þ
>WENV181902589
OGXW01045884
[OGXW] human gut metagenome; faeces
862
787
-
Ala
TGC
[ENA]
¢þ
>WENV181916226
OGYF01067665
[OGYF] human gut metagenome; faeces
611
536
-
Ala
TGC
[ENA]
¢þ
>W141194234
AYSW01000022
Betaproteobacteria
Robbsia andropogonis Ba3549 [AYSW]
20750
20675
-
Ala
TGC
[ENA]
¡û
>WENV181998299
OHAU01048927
[OHAU] human gut metagenome; faeces
241
316
+
Ala
TGC
[ENA]
¢þ
>WENV182009872
OHBJ01064698
[OHBJ] human gut metagenome; faeces
577
502
-
Ala
TGC
[ENA]
¢þ
>W141223397
BADF01000061
Betaproteobacteria
Herbaspirillum sp. B39 [BADF]
2023
2098
+
Ala
TGC
[ENA]
¡û
>W141223412
BADF01000695
Betaproteobacteria
Herbaspirillum sp. B39 [BADF]
385
310
-
Ala
TGC
[ENA]
¡û
>W141223513
BADI01001150
Betaproteobacteria
Herbaspirillum sp. B65 [BADI]
6116
6041
-
Ala
TGC
[ENA]
¡û
>W141241306
CAHF01000002
Betaproteobacteria
Noviherbaspirillum massiliense JC206 [CAHF]
3529
3454
-
Ala
TGC
[ENA]
¡û
>W141258895
CBXX010000006
Betaproteobacteria
Herbaspirillum sp. RV1423 [CBXX]
260174
260249
+
Ala
TGC
[ENA]
¡û
>WENV182609416
OJJV01007597
[OJJV] metagenome; faeces
2306
2231
-
Ala
TGC
[ENA]
¢þ
>WENV182655888
OJMI01106953
[OJMI] human gut metagenome; feces
77
152
+
Ala
TGC
[ENA]
¢þ
>WENV183037721
OLGA01061747
[OLGA] human gut metagenome; faeces
234
309
+
Ala
TGC
[ENA]
¢þ
>WENV183342557
OLWN01034383
[OLWN] human gut metagenome; feces
566
491
-
Ala
TGC
[ENA]
¢þ
>WENV183617988
OOFL01000960
[OOFL] marine metagenome; seawater
1017
942
-
Ala
TGC
[ENA]
¢þ
>WENV183655728
OQWD01064575
[OQWD] human gut metagenome; human gut
31
106
+
Ala
TGC
[ENA]
¢þ
>WENV183703706
PDVJ01037001
[PDVJ] alkali sediment metagenome; glacial lake sediment
403
478
+
Ala
TGC
[ENA]
¢þ
>WENV183730198
PJTR01003215
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
621
546
-
Ala
TGC
[ENA]
¢þ
>WENV183734683
PJTZ01039493
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
301
376
+
Ala
TGC
[ENA]
¢þ
>WENV183739235
PJUE01004204
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
1977
1902
-
Ala
TGC
[ENA]
¢þ
>ENV08001397
ABMY01000637
fish metagenome; microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling
74
1
-
Ala
TGC
[ENA]
¡û
>ENV08001438
ABNA01004286
fish metagenome; microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling
18
93
+
Ala
TGC
[ENA]
¡û
>ENV08001446
ABNA01024997
fish metagenome; microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling
83
8
-
Ala
TGC
[ENA]
¡û
>WENV170557696
CXWL01034333
[CXWL] groundwater metagenome; biofilm material
288
363
+
Ala
TGC
[ENA]
¢þ
>WENV170634927
JAHE01131095
[JAHE] sediment metagenome; lake sediment
568
493
-
Ala
TGC
[ENA]
¢þ
>WENV170662752
JXWW01161962
[JXWW] soil metagenome; rice field; organic GM Plot
346
421
+
Ala
TGC
[ENA]
¢þ
>C191004587
AP018738
Betaproteobacteria
Ferriphaselus amnicola OYT1 [AP018738]
2624408
2624333
-
Ala
TGC
-
¡û
>C191004600
AP018738
Betaproteobacteria
Ferriphaselus amnicola OYT1 [AP018738]
1631822
1631747
-
Ala
TGC
-
¡û
>C191004604
AP018738
Betaproteobacteria
Ferriphaselus amnicola OYT1 [AP018738]
1497279
1497204
-
Ala
TGC
-
¡û
>C191156636
CP037993
Betaproteobacteria
Herbaspirillum huttiense NFYY 53159 [CP037993]
5600695
5600620
-
Ala
TGC
-
¡û
>C191156638
CP037993
Betaproteobacteria
Herbaspirillum huttiense NFYY 53159 [CP037993]
5594932
5594857
-
Ala
TGC
-
¡û
>C191156643
CP037993
Betaproteobacteria
Herbaspirillum huttiense NFYY 53159 [CP037993]
4465861
4465786
-
Ala
TGC
-
¡û
>C191156645
CP037993
Betaproteobacteria
Herbaspirillum huttiense NFYY 53159 [CP037993]
4460098
4460023
-
Ala
TGC
-
¡û
>W1910578310
JWJC01000017
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
208486
208561
+
Ala
TGC
[ENA]
¡û
>W1911802795
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
3111366
3111291
-
Ala
TGC
[ENA]
¡û
>W1911802797
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
3069588
3069513
-
Ala
TGC
[ENA]
¡û
>W1911802818
QYUO01000002
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
524111
524186
+
Ala
TGC
[ENA]
¡û
>W1911802820
QYUO01000002
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
1573765
1573690
-
Ala
TGC
[ENA]
¡û
>C151087585
CP011930
Betaproteobacteria
Herbaspirillum seropedicae Z67 [CP011930]
5427524
5427449
-
Ala
TGC
[Ensembl]
¡û
>C151087590
CP011930
Betaproteobacteria
Herbaspirillum seropedicae Z67 [CP011930]
4442285
4442210
-
Ala
TGC
[Ensembl]
¡û
>W1511577588
LAQU01000081
Betaproteobacteria
Robbsia andropogonis ICMP2807 [LAQU]
3614
3539
-
Ala
TGC
[ENA]
¡û
>W1511683849
LFLT01000090
Betaproteobacteria
Herbaspirillum chlorophenolicum CPW301 [LFLT]
3578
3503
-
Ala
TGC
[ENA]
¡û
>W1511683896
LFLU01000036
Betaproteobacteria
Herbaspirillum rhizosphaerae UMS-37 [LFLU]
3523
3448
-
Ala
TGC
[ENA]
¡û
>C161053580
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
1043436
1043511
+
Ala
TGC
[Ensembl]
¡û
>C161053599
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
5114219
5114144
-
Ala
TGC
[Ensembl]
¡û
>C161053601
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
4862379
4862304
-
Ala
TGC
[Ensembl]
¡û
>C161060435
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
546168
546243
+
Ala
TGC
[Ensembl]
¡û
>C161060458
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
5526093
5526018
-
Ala
TGC
[Ensembl]
¡û
>C161060463
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
4524327
4524252
-
Ala
TGC
[Ensembl]
¡û
>W121086403
AKJW01000112
Betaproteobacteria
Herbaspirillum sp. CF444 [AKJW]
3608
3533
-
Ala
TGC
[ENA]
¡û
>W1710557556
FOLC01000053
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
3608
3533
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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