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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320757 (32 seq.)
>WENV180277130
OBHV01076691
[OBHV] metagenome; water
208
135
-
Ala
TGC
[ENA]
¡û
>WENV180583843
OCNB01244136
[OCNB] metagenome; diffuse fluid
40
113
+
Ala
TGC
[ENA]
¡û
>WENV170571409
FLOH01000152
[FLOH] marine metagenome; water
132366
132293
-
Ala
TGC
[ENA]
¡û
>WENV170597867
FUWD010017214
[FUWD] metagenome; unknown
313
240
-
Ala
TGC
[ENA]
¡û
>WENV170605114
FUWD010450458
[FUWD] metagenome; unknown
127
200
+
Ala
TGC
[ENA]
¡û
>C181020705
CP016766
Bacillota
Ligilactobacillus agilis La3 [CP016766]
51920
51994
+
Ala
TGC
-
¡û
>C181020712
CP016766
Bacillota
Ligilactobacillus agilis La3 [CP016766]
374758
374832
+
Ala
TGC
-
¡û
>C181020741
CP016766
Bacillota
Ligilactobacillus agilis La3 [CP016766]
2127794
2127868
+
Ala
TGC
-
¡û
>C181020751
CP016766
Bacillota
Ligilactobacillus agilis La3 [CP016766]
1563264
1563190
-
Ala
TGC
-
¡û
>W2010132826
BLAM01000173
Bacillota
Lactobacillus agilis SY212 [BLAM]
255
329
+
Ala
TGC
[ENA]
¡û
>W2010132921
BLAN01000131
Bacillota
Lactobacillus agilis SY111 [BLAN]
1880
1954
+
Ala
TGC
[ENA]
¡û
>W2010132953
BLAO01000033
Bacillota
Lactobacillus agilis SN10121 [BLAO]
244
318
+
Ala
TGC
[ENA]
¡û
>W2010133014
BLAP01000008
Bacillota
Lactobacillus agilis SN811 [BLAP]
3178
3104
-
Ala
TGC
[ENA]
¡û
>W2010133126
BLAQ01000122
Bacillota
Lactobacillus agilis SN4111 [BLAQ]
250
324
+
Ala
TGC
[ENA]
¡û
>W2010133284
BLAS01000042
Bacillota
Lactobacillus agilis PTL465 [BLAS]
149
223
+
Ala
TGC
[ENA]
¡û
>W2010133313
BLAS01000057
Bacillota
Lactobacillus agilis PTL465 [BLAS]
6
80
+
Ala
TGC
[ENA]
¡û
>SRA1032470
SRR035088.18589
454 Sequencing (SRP001809)
31
104
+
Ala
TGC
[SRA]
>SRA1037905
SRR035090.216465
454 Sequencing (SRP001811)
226
299
+
Ala
TGC
[SRA]
>SRA1039677
SRR035090.542432
454 Sequencing (SRP001811)
230
303
+
Ala
TGC
[SRA]
>W2110222637
JACJJY010000049
Bacillota
Ligilactobacillus agilis An796 [JACJJY]
170
96
-
Ala
TGC
[ENA]
¡û
>W2110222719
JACJJZ010000038
Bacillota
Ligilactobacillus agilis An795 [JACJJZ]
274
348
+
Ala
TGC
[ENA]
¡û
>W2110222722
JACJJZ010000045
Bacillota
Ligilactobacillus agilis An795 [JACJJZ]
220
146
-
Ala
TGC
[ENA]
¡û
>W2110302456
JADBIF010000029
Bacillota
Ligilactobacillus agilis YZ054 [JADBIF]
172
246
+
Ala
TGC
[ENA]
¡û
>W2110413226
JAEHNV010000030
Bacillota
Ligilactobacillus agilis T8a [JAEHNV]
199
273
+
Ala
TGC
[ENA]
¡û
>C231490810
CP104396
Bacillota
Ligilactobacillus agilis AM_LB6 [CP104396]
300131
300205
+
Ala
TGC
-
¡û
>C231490819
CP104396
Bacillota
Ligilactobacillus agilis AM_LB6 [CP104396]
409671
409745
+
Ala
TGC
-
¡û
>C231490826
CP104396
Bacillota
Ligilactobacillus agilis AM_LB6 [CP104396]
700582
700656
+
Ala
TGC
-
¡û
>C231490854
CP104396
Bacillota
Ligilactobacillus agilis AM_LB6 [CP104396]
1841778
1841704
-
Ala
TGC
-
¡û
>C231490901
CP104397
Bacillota
Ligilactobacillus agilis AM_LB8 [CP104397]
294461
294535
+
Ala
TGC
-
¡û
>C231490910
CP104397
Bacillota
Ligilactobacillus agilis AM_LB8 [CP104397]
403997
404071
+
Ala
TGC
-
¡û
>C231490917
CP104397
Bacillota
Ligilactobacillus agilis AM_LB8 [CP104397]
694908
694982
+
Ala
TGC
-
¡û
>C231490945
CP104397
Bacillota
Ligilactobacillus agilis AM_LB8 [CP104397]
1836046
1835972
-
Ala
TGC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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