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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320911 (99 seq.)
>W1710872856
LMMI01000003
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
20365
20440
+
Asn
GTT
[ENA]
¡û
>W1710872857
LMMI01000003
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
20605
20680
+
Asn
GTT
[ENA]
¡û
>W1710872953
LMMK01000008
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
28747
28822
+
Asn
GTT
[ENA]
¡û
>W1710873105
LMMN01000023
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
752403
752478
+
Asn
GTT
[ENA]
¡û
>W1710873467
LMMU01000009
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
17478
17553
+
Asn
GTT
[ENA]
¡û
>W1710873468
LMMU01000009
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
17718
17793
+
Asn
GTT
[ENA]
¡û
>W1710873556
LMMW01000023
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
257174
257099
-
Asn
GTT
[ENA]
¡û
>W1710873557
LMMW01000023
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
256934
256859
-
Asn
GTT
[ENA]
¡û
>W1710873604
LMMX01000034
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
65771
65846
+
Asn
GTT
[ENA]
¡û
>W1710873605
LMMX01000034
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
66011
66086
+
Asn
GTT
[ENA]
¡û
>W1710874158
LMNJ01000013
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
16563
16488
-
Asn
GTT
[ENA]
¡û
>W1710874363
LMNN01000024
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
369159
369234
+
Asn
GTT
[ENA]
¡û
>W1710874448
LMNP01000031
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
1153057
1153132
+
Asn
GTT
[ENA]
¡û
>W1710878283
LMQV01000004
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
156479
156404
-
Asn
GTT
[ENA]
¡û
>W1710878534
LMRA01000015
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
20347
20422
+
Asn
GTT
[ENA]
¡û
>W1710878726
LMRE01000042
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
20623
20698
+
Asn
GTT
[ENA]
¡û
>W1710878727
LMRE01000042
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
20863
20938
+
Asn
GTT
[ENA]
¡û
>W1711571770
MNAO01000360
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
2888
2813
-
Asn
GTT
[ENA]
¡û
>W131051716
AMXU01000008
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
47125
47050
-
Asn
GTT
[ENA]
¡û
>WENV181168715
OEIU01679726
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
80
155
+
Asn
GTT
[ENA]
¡û
>C08006504
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
5255459
5255534
+
Asn
GTT
[Ensembl]
¡û
>C08006651
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
5611814
5611889
+
Asn
GTT
[Ensembl]
¡û
>WENV170586581
FUFK010429352
[FUFK] metagenome; unknown
83
158
+
Asn
GTT
[ENA]
¡û
>C181227881
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
500382
500307
-
Asn
GTT
-
¡û
>W09106840
ABEC01000002
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
806009
805934
-
Asn
GTT
[ENA]
¡û
>C09107434
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
5534035
5534110
+
Asn
GTT
[Ensembl]
¡û
>C09107520
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
5741826
5741901
+
Asn
GTT
[Ensembl]
¡û
>W1810057217
PDHT01000034
Alphaproteobacteria
Methylobacterium sp. V23 [PDHT]
26828
26903
+
Asn
GTT
[ENA]
¡û
>W1810487238
QAYK01000036
Alphaproteobacteria
Methylobacterium sp. GV104 [QAYK]
1559
1634
+
Asn
GTT
[ENA]
¡û
>W1810887334
QUOY01000001
Alphaproteobacteria
Methylovirgula sp. 4M-Z18 [QUOY]
189998
189923
-
Asn
GTT
[ENA]
¡û
>SRA1015292
SRR023846.1653
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
172
97
-
Asn
GTT
[SRA]
>SRA1015942
SRR023846.274914
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
79
4
-
Asn
GTT
[SRA]
>SRA1016192
SRR023846.392926
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
95
20
-
Asn
GTT
[SRA]
>SRA1016354
SRR023846.461743
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
192
117
-
Asn
GTT
[SRA]
>W2010100627
BJVP01000001
Alphaproteobacteria
Methylorubrum extorquens NBRC 15911 [BJVP]
368645
368720
+
Asn
GTT
[ENA]
¡û
>W2010105690
BJZT01000004
Alphaproteobacteria
Methylobacterium haplocladii NBRC 107714 [BJZT]
33574
33649
+
Asn
GTT
[ENA]
¡û
>W2010535199
JAAPAY010000001
Alphaproteobacteria
Methylobacterium sp. ISTM1 [JAAPAY]
244909
244834
-
Asn
GTT
[ENA]
¡û
>W2010712742
JACHOP010000008
Alphaproteobacteria
Methylorubrum rhodinum DSM 2163 [JACHOP]
32572
32497
-
Asn
GTT
[ENA]
¡û
>W2010740286
JACJIB010000002
Alphaproteobacteria
Methylorubrum thiocyanatum DSM 11490 [JACJIB]
382524
382599
+
Asn
GTT
[ENA]
¡û
>W2011398133
RCIG01000001
Alphaproteobacteria
Methylobacterium sp. DB1607 [RCIG]
230872
230947
+
Asn
GTT
[ENA]
¡û
>W2011540756
SCOS01000004
Alphaproteobacteria
Methylobacterium sp. L1A1 [SCOS]
162001
161926
-
Asn
GTT
[ENA]
¡û
>W2011676671
SRHQ01000009
Alphaproteobacteria
Methylorubrum sp. Q1 [SRHQ]
7870
7945
+
Asn
GTT
[ENA]
¡û
>W2012126889
VRUZ01000059
Alphaproteobacteria
Methylobacterium sp. WL69 [VRUZ]
17217
17292
+
Asn
GTT
[ENA]
¡û
>W2012126890
VRUZ01000059
Alphaproteobacteria
Methylobacterium sp. WL69 [VRUZ]
17457
17532
+
Asn
GTT
[ENA]
¡û
>W2012221244
VZZJ01000009
Alphaproteobacteria
Methylobacterium sp. YIM 132548 [VZZJ]
69938
70013
+
Asn
GTT
[ENA]
¡û
>W2012221298
VZZK01000028
Alphaproteobacteria
Methylobacterium soli YIM 48816 [VZZK]
74674
74749
+
Asn
GTT
[ENA]
¡û
>W2012311095
WEKV01000020
Alphaproteobacteria
Methylorubrum populi Pinkel [WEKV]
411931
412006
+
Asn
GTT
[ENA]
¡û
>C201079733
CP039546
Alphaproteobacteria
Methylorubrum populi YC-XJ1 [CP039546]
5208075
5208150
+
Asn
GTT
-
¡û
>C201203456
CP047607
Alphaproteobacteria
Methylobacterium sp. NI91 [CP047607]
5131674
5131749
+
Asn
GTT
-
¡û
>C231024559
AP025942
Alphaproteobacteria
Methylorubrum sp. GM97 [AP025942]
5259392
5259467
+
Asn
GTT
-
¡û
>W2110752839
NKUI01000282
Alphaproteobacteria
Methylorubrum zatmanii LMG 6087 [NKUI]
1432
1507
+
Asn
GTT
[ENA]
¡û
>C231516232
CP107532
Alphaproteobacteria
Methylobacterium sp. FF17 [CP107532]
5191581
5191656
+
Asn
GTT
-
¡û
>C231516233
CP107532
Alphaproteobacteria
Methylobacterium sp. FF17 [CP107532]
5191937
5192012
+
Asn
GTT
-
¡û
>C231527969
CP110130
Alphaproteobacteria
Methylorubrum extorquens NBC_00404 [CP110130]
4850579
4850654
+
Asn
GTT
-
¡û
>C241180468
CP073633
Alphaproteobacteria
Methylorubrum extorquens ATCC 55366 [CP073633]
5747026
5747101
+
Asn
GTT
-
¡û
>W2310012766
BPQD01000033
Alphaproteobacteria
Methylobacterium adhaesivum DSM 17169 [BPQD]
25783
25708
-
Asn
GTT
[ENA]
¡û
>W2310012767
BPQD01000033
Alphaproteobacteria
Methylobacterium adhaesivum DSM 17169 [BPQD]
25544
25469
-
Asn
GTT
[ENA]
¡û
>W2310013109
BPQL01000020
Alphaproteobacteria
Methylobacterium goesingense DSM 21331 [BPQL]
47380
47455
+
Asn
GTT
[ENA]
¡û
>W2310013221
BPQN01000076
Alphaproteobacteria
Methylobacterium haplocladii DSM 24195 [BPQN]
3487
3562
+
Asn
GTT
[ENA]
¡û
>W2310013413
BPQR01000084
Alphaproteobacteria
Methylobacterium jeotgali LMG 23639 [BPQR]
2129
2204
+
Asn
GTT
[ENA]
¡û
>W2310013702
BPQY01000085
Alphaproteobacteria
Methylobacterium soli KCTC 22810 [BPQY]
1037
962
-
Asn
GTT
[ENA]
¡û
>W2310013790
BPRA01000005
Alphaproteobacteria
Methylobacterium thuringiense DSM 23674 [BPRA]
181813
181888
+
Asn
GTT
[ENA]
¡û
>W2310013877
BPRC01000004
Alphaproteobacteria
Methylorubrum aminovorans NBRC 15686 [BPRC]
68193
68118
-
Asn
GTT
[ENA]
¡û
>W2310013944
BPRD01000510
Alphaproteobacteria
Methylorubrum podarium DSM 15083 [BPRD]
5768
5843
+
Asn
GTT
[ENA]
¡û
>W2310013962
BPRE01000004
Alphaproteobacteria
Methylorubrum suomiense DSM 14458 [BPRE]
342878
342803
-
Asn
GTT
[ENA]
¡û
>W2310014004
BPRF01000005
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BPRF]
119991
119916
-
Asn
GTT
[ENA]
¡û
>C161004980
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
5230690
5230765
+
Asn
GTT
[Ensembl]
¡û
>C161040227
CP012156
Alphaproteobacteria
Hyphomonadaceae bacterium UKL13-1 [CP012156]
1225321
1225246
-
Asn
GTT
-
¡û
>W1610042962
BAZM01000264
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
682
757
+
Asn
GTT
[ENA]
¡û
>W1610043175
BAZP01000251
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
2019
1944
-
Asn
GTT
[ENA]
¡û
>W121010681
AGJK01000089
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
18221
18296
+
Asn
GTT
[ENA]
¡û
>W1610735202
LMMI01000003
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
20365
20440
+
Asn
GTT
[ENA]
¡û
>W1610735203
LMMI01000003
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
20605
20680
+
Asn
GTT
[ENA]
¡û
>W1610735299
LMMK01000008
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
28747
28822
+
Asn
GTT
[ENA]
¡û
>W1610735451
LMMN01000023
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
752403
752478
+
Asn
GTT
[ENA]
¡û
>W1610735591
LMMQ01000031
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
176778
176703
-
Asn
GTT
[ENA]
¡û
>W1610735813
LMMU01000009
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
17478
17553
+
Asn
GTT
[ENA]
¡û
>W1610735814
LMMU01000009
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
17718
17793
+
Asn
GTT
[ENA]
¡û
>W1610735902
LMMW01000023
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
257174
257099
-
Asn
GTT
[ENA]
¡û
>W1610735903
LMMW01000023
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
256934
256859
-
Asn
GTT
[ENA]
¡û
>W1610735950
LMMX01000034
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
65771
65846
+
Asn
GTT
[ENA]
¡û
>W1610735951
LMMX01000034
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
66011
66086
+
Asn
GTT
[ENA]
¡û
>W1610736278
LMNE01000021
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
16364
16289
-
Asn
GTT
[ENA]
¡û
>W1610736359
LMNG01000013
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
30014
29939
-
Asn
GTT
[ENA]
¡û
>W1610736360
LMNG01000013
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
29774
29699
-
Asn
GTT
[ENA]
¡û
>W1610736504
LMNJ01000013
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
16563
16488
-
Asn
GTT
[ENA]
¡û
>W1610736592
LMNL01000009
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
16564
16489
-
Asn
GTT
[ENA]
¡û
>W1610736709
LMNN01000024
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
369159
369234
+
Asn
GTT
[ENA]
¡û
>W1610736794
LMNP01000031
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
1153057
1153132
+
Asn
GTT
[ENA]
¡û
>W1610736834
LMNQ01000023
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
220942
220867
-
Asn
GTT
[ENA]
¡û
>W1610737026
LMNU01000049
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
128181
128256
+
Asn
GTT
[ENA]
¡û
>W1610740629
LMQV01000004
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
156479
156404
-
Asn
GTT
[ENA]
¡û
>W1610740880
LMRA01000015
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
20347
20422
+
Asn
GTT
[ENA]
¡û
>W1610741072
LMRE01000042
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
20623
20698
+
Asn
GTT
[ENA]
¡û
>W1610741073
LMRE01000042
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
20863
20938
+
Asn
GTT
[ENA]
¡û
>W1710040122
BAZM01000264
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
682
757
+
Asn
GTT
[ENA]
¡û
>W1710040335
BAZP01000251
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
2019
1944
-
Asn
GTT
[ENA]
¡û
>W1710563202
FOPM01000029
Alphaproteobacteria
Methylobacterium gossipiicola [FOPM]
15830
15905
+
Asn
GTT
[ENA]
¡û
>W1710563203
FOPM01000029
Alphaproteobacteria
Methylobacterium gossipiicola [FOPM]
16056
16131
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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