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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.321096 (10 seq.)
>W131215974
ATVL01000007
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
727469
727545
+
Met
CAT
[ENA]
¡û
>W1810089872
PGFA01000001
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
1062069
1062143
+
Met
CAT
[ENA]
¡û
>SRA1003134
SRR002326.232129
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
143
69
-
Met
CAT
[SRA]
>C151009439
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
398517
398441
-
Met
CAT
[Ensembl]
¡û
>C151017377
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
3249914
3249840
-
Met
CAT
[Ensembl]
¡û
>C151063984
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
1728874
1728950
+
Met
CAT
[Ensembl]
¡û
>C151096221
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
2060883
2060809
-
Met
CAT
-
¡û
>C161061566
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
4266690
4266614
-
Met
CAT
[Ensembl]
¡û
>W1710573741
FOXS01000003
Bacteroidota
Hymenobacter arizonensis [FOXS]
689318
689394
+
Met
CAT
[ENA]
¡û
>W1710610156
FYEW01000001
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
1907495
1907419
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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