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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.321508 (63 seq.)
>W1711386883
MEFY01000002
Actinomycetota
Leifsonia sp. SCN 70-46 [MEFY]
1957883
1957957
+
Ala
GGC
[ENA]
¡û
>W131208631
ATIA01000059
Actinomycetota
Leifsonia rubra CMS 76R [ATIA]
220565
220641
+
Ala
GGC
[ENA]
¡û
>W131216940
ATWH01000006
Actinomycetota
Glaciibacter superstes DSM 21135 [ATWH]
235645
235569
-
Ala
GGC
[ENA]
¡û
>W1711505538
MKVP01000001
Actinomycetota
Micrococcales bacterium 70-64 [MKVP]
2550714
2550788
+
Ala
GGC
[ENA]
¡û
>w013958
AAOB01000003
Actinomycetota
marine actinobacterium PHSC20C1 [AAOB]
142210
142132
-
Ala
GGC
[ENA]
¡û
>WENV180016064
FSTY01000592
[FSTY] metagenome; soil
8
82
+
Ala
GGC
[ENA]
¡û
>WENV180016075
FSTZ01000043
[FSTZ] metagenome; soil
2117
2191
+
Ala
GGC
[ENA]
¡û
>WENV180016644
FSVR01000021
[FSVR] metagenome; soil
1943
2017
+
Ala
GGC
[ENA]
¡û
>WENV180017026
FSWJ01000567
[FSWJ] metagenome; soil
696
620
-
Ala
GGC
[ENA]
¡û
>WENV180017676
FSXL01000630
[FSXL] metagenome; soil
10950
11024
+
Ala
GGC
[ENA]
¡û
>WENV180024041
FTIF01013572
[FTIF] metagenome; soil
309
233
-
Ala
GGC
[ENA]
¡û
>WENV180029030
FTJI01006068
[FTJI] metagenome; soil
1
77
+
Ala
GGC
[ENA]
¡û
>WENV180033558
FTKK01525045
[FTKK] metagenome; soil
122
48
-
Ala
GGC
[ENA]
¡û
>WENV180034009
FTKM01071579
[FTKM] metagenome; soil
1393
1319
-
Ala
GGC
[ENA]
¡û
>WENV180034552
FTKR01006199
[FTKR] metagenome; soil
1
77
+
Ala
GGC
[ENA]
¡û
>WENV180304537
OBJI01111258
[OBJI] soil metagenome; soil
96
22
-
Ala
GGC
[ENA]
¡û
>WENV180344836
OBLL01236666
[OBLL] soil metagenome; soil
99
23
-
Ala
GGC
[ENA]
¡û
>WENV181222561
OFDC01000008
[OFDC] hot springs metagenome; Water
70042
69966
-
Ala
GGC
[ENA]
¡û
>WENV181385090
OFRI01032723
[OFRI] wastewater metagenome; Exp Tend VB 90WW
949
873
-
Ala
GGC
[ENA]
¡û
>WENV170700545
LIDZ01015223
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
4191
4113
-
Ala
GGC
[ENA]
¡û
>C181143990
CP026951
Actinomycetota
Salinibacterium hongtaonis CGMCC 1.16371 [CP026951]
1618089
1618015
-
Ala
GGC
-
¡û
>C191139349
CP035375
Actinomycetota
Salinibacterium sp. UTAS2018 [CP035375]
839609
839533
-
Ala
GGC
-
¡û
>W1911497882
OCST01000003
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
357694
357770
+
Ala
GGC
[ENA]
¡û
>W1911823633
QZVS01000097
Actinomycetota
Cryobacterium sp. Hh39 [QZVS]
21704
21630
-
Ala
GGC
[ENA]
¡û
>W1810089927
PGFB01000002
Actinomycetota
Compostimonas suwonensis DSM 25625 [PGFB]
352536
352460
-
Ala
GGC
[ENA]
¡û
>W1810090196
PGFH01000001
Actinomycetota
Salinibacterium amurskyense DSM 16400 [PGFH]
1372714
1372790
+
Ala
GGC
[ENA]
¡û
>SRA1002798
SRR002326.23822
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
126
202
+
Ala
GGC
[SRA]
>W1810364688
PVTL01000001
Actinomycetota
Glaciihabitans tibetensis CGMCC 1.12484 [PVTL]
275048
275126
+
Ala
GGC
[ENA]
¡û
>W2010471651
JAAGWZ010000002
Actinomycetota
Galbitalea soli NBRC 108727 [JAAGWZ]
858651
858725
+
Ala
GGC
[ENA]
¡û
>W2010498951
JAALGE010000004
Actinomycetota
Marisediminicola sp. SM7 A14 [JAALGE]
21966
22043
+
Ala
GGC
[ENA]
¡û
>W2010674680
JACCFM010000001
Actinomycetota
Leifsonia psychrotolerans LI1 [JACCFM]
855250
855324
+
Ala
GGC
[ENA]
¡û
>W2010674730
JACCFN010000001
Actinomycetota
Galbitalea soli DSM 105515 [JACCFN]
1261226
1261300
+
Ala
GGC
[ENA]
¡û
>W2010709740
JACHMJ010000001
Actinomycetota
Conyzicola lurida DSM 105784 [JACHMJ]
1918517
1918443
-
Ala
GGC
[ENA]
¡û
>W2011158786
OCST01000003
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
357694
357770
+
Ala
GGC
[ENA]
¡û
>W2011350623
QZVS01000097
Actinomycetota
Cryobacterium sp. Hh39 [QZVS]
21704
21630
-
Ala
GGC
[ENA]
¡û
>W2011404148
RCWI01000002
Actinomycetota
Salinibacterium amurskyense JCM 12362 [RCWI]
342317
342393
+
Ala
GGC
[ENA]
¡û
>W2011600622
SISG01000001
Actinomycetota
Glaciihabitans sp. RP-3-7 [SISG]
1305645
1305571
-
Ala
GGC
[ENA]
¡û
>W2011662075
SOHE01000013
Actinomycetota
Cryobacterium sp. Hh14 [SOHE]
20826
20752
-
Ala
GGC
[ENA]
¡û
>W2012020453
VFOM01000001
Actinomycetota
Homoserinimonas aerilata DSM 26477 [VFOM]
898666
898742
+
Ala
GGC
[ENA]
¡û
>W2012023009
VFRA01000001
Actinomycetota
Rhodoglobus vestalii DSM 21947 [VFRA]
2661330
2661406
+
Ala
GGC
[ENA]
¡û
>W2012125081
VRMG01000005
Actinomycetota
Glaciihabitans sp. CHu50b-6-2 [VRMG]
687237
687313
+
Ala
GGC
[ENA]
¡û
>W2012125082
VRMG01000005
Actinomycetota
Glaciihabitans sp. CHu50b-6-2 [VRMG]
696245
696319
+
Ala
GGC
[ENA]
¡û
>W2110023517
BMGB01000001
Actinomycetota
Conyzicola nivalis CGMCC 1.12813 [BMGB]
1186489
1186413
-
Ala
GGC
[ENA]
¡û
>W2110029907
BMLC01000001
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.5381 [BMLC]
462954
462878
-
Ala
GGC
[ENA]
¡û
>W2110050869
BMZU01000001
Actinomycetota
Salinibacterium amurskyense KCTC 9931 [BMZU]
529203
529127
-
Ala
GGC
[ENA]
¡û
>W2110161120
JAAVUZ010000004
Actinomycetota
Glaciihabitans sp. dw_435 [JAAVUZ]
188850
188925
+
Ala
GGC
[ENA]
¡û
>W2110363662
JADOVH010000001
Actinomycetota
Frigoribacterium sp. CG_9.8 [JADOVH]
883547
883621
+
Ala
GGC
[ENA]
¡û
>W2110397093
JADYWE010000001
Actinomycetota
Salinibacterium sp. NK8237 [JADYWE]
566425
566349
-
Ala
GGC
[ENA]
¡û
>W2110397135
JADYWF010000001
Actinomycetota
Salinibacterium sp. NG253 [JADYWF]
541929
541853
-
Ala
GGC
[ENA]
¡û
>W2110397177
JADYWG010000001
Actinomycetota
Salinibacterium sp. NG22 [JADYWG]
557732
557656
-
Ala
GGC
[ENA]
¡û
>W2110397205
JADYWH010000001
Actinomycetota
Salinibacterium sp. NSLL17 [JADYWH]
1418304
1418380
+
Ala
GGC
[ENA]
¡û
>W2110397247
JADYWI010000001
Actinomycetota
Salinibacterium sp. NSLL150 [JADYWI]
1418728
1418804
+
Ala
GGC
[ENA]
¡û
>W2110397289
JADYWJ010000001
Actinomycetota
Salinibacterium sp. NSLL16 [JADYWJ]
1418728
1418804
+
Ala
GGC
[ENA]
¡û
>W2110397332
JADYWK010000001
Actinomycetota
Salinibacterium sp. NSLL35 [JADYWK]
1418728
1418804
+
Ala
GGC
[ENA]
¡û
>W2110398004
JADYWT010000001
Actinomycetota
Salinibacterium sp. SWN1162 [JADYWT]
1493987
1494063
+
Ala
GGC
[ENA]
¡û
>W2110398046
JADYWU010000001
Actinomycetota
Salinibacterium sp. SWN167 [JADYWU]
1511523
1511599
+
Ala
GGC
[ENA]
¡û
>W2110398098
JADYWV010000002
Actinomycetota
Salinibacterium sp. SWN139 [JADYWV]
417459
417535
+
Ala
GGC
[ENA]
¡û
>W2110398130
JADYWW010000001
Actinomycetota
Salinibacterium sp. SWN248 [JADYWW]
1466632
1466708
+
Ala
GGC
[ENA]
¡û
>W2110438053
JAEPES010000001
Actinomycetota
Lacisediminihabitans changchengi G11-30 [JAEPES]
563708
563782
+
Ala
GGC
[ENA]
¡û
>C211052087
CP040814
Actinomycetota
Salinibacterium sp. M195 [CP040814]
1681911
1681987
+
Ala
GGC
-
¡û
>C211060590
CP043653
Actinomycetota
Glaciihabitans sp. INWT7 [CP043653]
1991423
1991349
-
Ala
GGC
-
¡û
>C241017598
CP017146
Actinomycetota
Marisediminicola antarctica ZS314 [CP017146]
1921573
1921649
+
Ala
GGC
-
¡û
>W121043536
AHWA01000002
Actinomycetota
Salinibacterium sp. PAMC 21357 [AHWA]
576234
576158
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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