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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.321561 (137 seq.)
>W131238915
BAII02000020
Bacillota
Clostridiales bacterium VE202-26 [BAII]
260409
260483
+
Ala
GGC
[ENA]
¡û
>W1712036101
NFHH01000001
Bacillota
Blautia sp. An81 [NFHH]
259117
259044
-
Ala
GGC
[ENA]
¡û
>W1712037433
NFIF01000001
Bacillota
Blautia sp. An46 [NFIF]
253166
253239
+
Ala
GGC
[ENA]
¡û
>W1712039134
NFJL01000017
Bacillota
Blautia sp. An249 [NFJL]
73889
73817
-
Ala
GGC
[ENA]
¡û
>W1712041693
NFLF01000006
Bacillota
Lachnoclostridium sp. An138 [NFLF]
40331
40259
-
Ala
GGC
[ENA]
¡û
>W1712041856
NFLI01000010
Bacillota
Lachnoclostridium sp. An131 [NFLI]
108008
108080
+
Ala
GGC
[ENA]
¡û
>C171130225
LT635479
Bacillota
Lachnoclostridium phocaeense Marseille-P3177 [LT635479]
815399
815473
+
Ala
GGC
-
¡û
>WENV180147867
OAUH01013770
[OAUH] human gut metagenome; faeces
495
421
-
Ala
GGC
[ENA]
¡û
>WENV180192535
OAXJ01019283
[OAXJ] human gut metagenome; faeces
477
551
+
Ala
GGC
[ENA]
¡û
>WENV180235914
OBCU01007770
[OBCU] human gut metagenome; human gut
1199
1125
-
Ala
GGC
[ENA]
¡û
>WENV180417418
OBVH01021237
[OBVH] human gut metagenome; faeces
4
78
+
Ala
GGC
[ENA]
¡û
>WENV180458272
OBXV01007943
[OBXV] human gut metagenome; faeces
341
413
+
Ala
GGC
[ENA]
¡û
>WENV180466898
OBYG01020257
[OBYG] human gut metagenome; faeces
763
689
-
Ala
GGC
[ENA]
¡û
>WENV180509469
OCAV01024228
[OCAV] human gut metagenome; faeces
510
584
+
Ala
GGC
[ENA]
¡û
>WENV180660863
OCVV010971004
[OCVV] gut metagenome; gut
75
3
-
Ala
GGC
[ENA]
¡û
>WENV180660864
OCVV010971004
[OCVV] gut metagenome; gut
75
3
-
Ala
GGC
[ENA]
¡û
>WENV180723717
ODGN01022599
[ODGN] human metagenome; G_DNA_Stool
22
96
+
Ala
GGC
[ENA]
¡û
>W08003185
ABFY02000067
Bacillota
[Clostridium] scindens ATCC 35704 [ABFY]
193474
193548
+
Ala
GGC
[ENA]
¡û
>WENV180867364
ODLK01001090
[ODLK] human metagenome; G_DNA_Stool
2998
3072
+
Ala
GGC
[ENA]
¡û
>WENV180965428
ODUP01001094
[ODUP] human metagenome; G_DNA_Stool
10569
10495
-
Ala
GGC
[ENA]
¡û
>WENV181194478
OEQQ01009456
[OEQQ] metagenome; Caecal content
113
39
-
Ala
GGC
[ENA]
¡û
>WENV181199301
OERG01013228
[OERG] metagenome; Caecal content
510
583
+
Ala
GGC
[ENA]
¡û
>WENV181202930
OERS01020180
[OERS] metagenome; Caecal content
154
227
+
Ala
GGC
[ENA]
¡û
>WENV181203895
OERX01004374
[OERX] metagenome; Caecal content
726
652
-
Ala
GGC
[ENA]
¡û
>WENV181236531
OFEZ01001847
[OFEZ] mouse gut metagenome; faeces
9551
9623
+
Ala
GGC
[ENA]
¡û
>WENV181246172
OFFJ01012198
[OFFJ] mouse gut metagenome; faeces
366
440
+
Ala
GGC
[ENA]
¡û
>WENV181251999
OFFP01001813
[OFFP] mouse gut metagenome; faeces
3093
3021
-
Ala
GGC
[ENA]
¡û
>WENV181253641
OFFQ01024385
[OFFQ] mouse gut metagenome; faeces
877
949
+
Ala
GGC
[ENA]
¡û
>WENV181254615
OFFR01023652
[OFFR] mouse gut metagenome; faeces
345
417
+
Ala
GGC
[ENA]
¡û
>WENV181261123
OFFX01006447
[OFFX] mouse gut metagenome; faeces
4014
4086
+
Ala
GGC
[ENA]
¡û
>WENV181265961
OFGB01005315
[OFGB] mouse gut metagenome; faeces
775
847
+
Ala
GGC
[ENA]
¡û
>WENV181266221
OFGB01024989
[OFGB] mouse gut metagenome; faeces
442
514
+
Ala
GGC
[ENA]
¡û
>WENV181267603
OFGC01029996
[OFGC] mouse gut metagenome; faeces
845
917
+
Ala
GGC
[ENA]
¡û
>WENV181268334
OFGD01004055
[OFGD] mouse gut metagenome; faeces
108
36
-
Ala
GGC
[ENA]
¡û
>WENV181269379
OFGE01001404
[OFGE] mouse gut metagenome; faeces
10577
10649
+
Ala
GGC
[ENA]
¡û
>WENV181271231
OFGF01012754
[OFGF] mouse gut metagenome; faeces
1764
1836
+
Ala
GGC
[ENA]
¡û
>WENV181272586
OFGG01027104
[OFGG] mouse gut metagenome; faeces
1388
1316
-
Ala
GGC
[ENA]
¡û
>WENV181274130
OFGH01071480
[OFGH] mouse gut metagenome; faeces
271
199
-
Ala
GGC
[ENA]
¡û
>WENV181280045
OFGN01023131
[OFGN] mouse gut metagenome; faeces
728
656
-
Ala
GGC
[ENA]
¡û
>WENV181282504
OFGP01020447
[OFGP] mouse gut metagenome; faeces
78
6
-
Ala
GGC
[ENA]
¡û
>WENV181283231
OFGQ01001447
[OFGQ] mouse gut metagenome; faeces
421
348
-
Ala
GGC
[ENA]
¡û
>WENV181340090
OFMG01013714
[OFMG] human gut metagenome; human gut
788
714
-
Ala
GGC
[ENA]
¡û
>WENV181344900
OFMK01007156
[OFMK] human gut metagenome; human gut
2301
2375
+
Ala
GGC
[ENA]
¡û
>WENV181420754
OGCN01005426
[OGCN] human gut metagenome; human gut
157
85
-
Ala
GGC
[ENA]
¡û
>WENV181442142
OGDN01060859
[OGDN] human gut metagenome; human gut
265
337
+
Ala
GGC
[ENA]
¡û
>WENV181581674
OGKA01039053
[OGKA] metagenome; Human gut stool
545
473
-
Ala
GGC
[ENA]
¡û
>WENV181752137
OGQQ01001712
[OGQQ] human gut metagenome; faeces
15913
15987
+
Ala
GGC
[ENA]
¡û
>WENV181785803
OGRN01000116
[OGRN] human gut metagenome; faeces
71750
71823
+
Ala
GGC
[ENA]
¡û
>WENV181796048
OGRT01002879
[OGRT] human gut metagenome; faeces
870
796
-
Ala
GGC
[ENA]
¡û
>WENV181896886
OGXS01005924
[OGXS] human gut metagenome; faeces
2614
2688
+
Ala
GGC
[ENA]
¡û
>WENV181918319
OGYH01002761
[OGYH] human gut metagenome; faeces
1153
1079
-
Ala
GGC
[ENA]
¡û
>WENV181919670
OGYI01001948
[OGYI] human gut metagenome; faeces
13355
13281
-
Ala
GGC
[ENA]
¡û
>WENV181931420
OGYQ01000391
[OGYQ] human gut metagenome; faeces
35305
35379
+
Ala
GGC
[ENA]
¡û
>WENV181933433
OGYS01003437
[OGYS] human gut metagenome; faeces
1716
1790
+
Ala
GGC
[ENA]
¡û
>WENV181941193
OGYY01001422
[OGYY] human gut metagenome; faeces
14571
14497
-
Ala
GGC
[ENA]
¡û
>WENV181942196
OGYY01065108
[OGYY] human gut metagenome; faeces
556
628
+
Ala
GGC
[ENA]
¡û
>WENV181952132
OGZI01000007
[OGZI] human gut metagenome; faeces
216908
216982
+
Ala
GGC
[ENA]
¡û
>WENV181971036
OGZY01001354
[OGZY] human gut metagenome; faeces
1155
1081
-
Ala
GGC
[ENA]
¡û
>W141224190
BAHS01000025
Bacillota
[Clostridium] scindens VE202-05 [BAHS]
5445
5371
-
Ala
GGC
[ENA]
¡û
>WENV182421736
OIGT01014291
[OIGT] human gut metagenome; human gut
449
377
-
Ala
GGC
[ENA]
¡û
>WENV182424050
OIHC01020971
[OIHC] human gut metagenome; human gut
298
370
+
Ala
GGC
[ENA]
¡û
>WENV182749237
OJQX01016024
[OJQX] human gut metagenome; stool sample
436
362
-
Ala
GGC
[ENA]
¡û
>WENV182772858
OJRY01012365
[OJRY] human gut metagenome; human gut
160
86
-
Ala
GGC
[ENA]
¡û
>WENV182774099
OJRZ01019784
[OJRZ] human gut metagenome; human gut
681
607
-
Ala
GGC
[ENA]
¡û
>WENV182782351
OJSF01000107
[OJSF] human gut metagenome; human gut
45459
45533
+
Ala
GGC
[ENA]
¡û
>WENV182783347
OJSG01000038
[OJSG] human gut metagenome; human gut
104033
104107
+
Ala
GGC
[ENA]
¡û
>WENV182784339
OJSH01000055
[OJSH] human gut metagenome; human gut
104033
104107
+
Ala
GGC
[ENA]
¡û
>WENV182785518
OJSI01000043
[OJSI] human gut metagenome; human gut
46550
46476
-
Ala
GGC
[ENA]
¡û
>WENV182786690
OJSJ01000229
[OJSJ] human gut metagenome; human gut
46550
46476
-
Ala
GGC
[ENA]
¡û
>WENV182787569
OJSK01000371
[OJSK] human gut metagenome; human gut
46550
46476
-
Ala
GGC
[ENA]
¡û
>WENV182796680
OJSQ01054877
[OJSQ] human gut metagenome; human gut
387
314
-
Ala
GGC
[ENA]
¡û
>WENV182890953
OKSH01000009
[OKSH] human gut metagenome; faeces
111549
111623
+
Ala
GGC
[ENA]
¡û
>WENV183015745
OLEP01026605
[OLEP] human gut metagenome; human gut
262
336
+
Ala
GGC
[ENA]
¡û
>WENV183092162
OLKG01054570
[OLKG] human gut metagenome; human gut
260
334
+
Ala
GGC
[ENA]
¡û
>WENV183120381
OLNU01001417
[OLNU] human gut metagenome; faeces
962
890
-
Ala
GGC
[ENA]
¡û
>WENV183135607
OLOE01005070
[OLOE] human gut metagenome; faeces
3016
3090
+
Ala
GGC
[ENA]
¡û
>WENV183174891
OLPE01027780
[OLPE] human gut metagenome; faeces
844
918
+
Ala
GGC
[ENA]
¡û
>WENV183202579
OLPX01009177
[OLPX] human gut metagenome; faeces
2499
2573
+
Ala
GGC
[ENA]
¡û
>WENV183211539
OLQC01096182
[OLQC] human gut metagenome; faeces
433
505
+
Ala
GGC
[ENA]
¡û
>WENV183216711
OLQH01005469
[OLQH] human gut metagenome; faeces
106
32
-
Ala
GGC
[ENA]
¡û
>WENV183224953
OLQN01016716
[OLQN] human gut metagenome; faeces
884
958
+
Ala
GGC
[ENA]
¡û
>WENV183232321
OLQU01006587
[OLQU] human gut metagenome; faeces
567
493
-
Ala
GGC
[ENA]
¡û
>WENV183266712
OLRT01007907
[OLRT] human gut metagenome; faeces
119
191
+
Ala
GGC
[ENA]
¡û
>WENV183273269
OLRX01004207
[OLRX] human gut metagenome; faeces
6568
6494
-
Ala
GGC
[ENA]
¡û
>WENV183290602
OLSH01000860
[OLSH] human gut metagenome; faeces
4984
4910
-
Ala
GGC
[ENA]
¡û
>WENV183296796
OLSM01000224
[OLSM] human gut metagenome; faeces
32462
32536
+
Ala
GGC
[ENA]
¡û
>WENV183301251
OLSO01043514
[OLSO] human gut metagenome; faeces
176
104
-
Ala
GGC
[ENA]
¡û
>WENV183317519
OLVT01006550
[OLVT] human gut metagenome; faeces
345
419
+
Ala
GGC
[ENA]
¡û
>WENV183500489
OMGQ01020028
[OMGQ] human gut metagenome; human gut
859
933
+
Ala
GGC
[ENA]
¡û
>WENV183547496
OOAU01032707
[OOAU] human gut metagenome; human gut
34
108
+
Ala
GGC
[ENA]
¡û
>WENV183555698
OOBN01009056
[OOBN] human gut metagenome; human gut
1993
1919
-
Ala
GGC
[ENA]
¡û
>WENV183762715
PPYE01280557
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
685
611
-
Ala
GGC
[ENA]
¡û
>WENV183763185
PPYE01293444
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
29391
29465
+
Ala
GGC
[ENA]
¡û
>WENV183763399
PPYE01295111
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
78
4
-
Ala
GGC
[ENA]
¡û
>WENV183770721
PPYE01441650
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1041
1115
+
Ala
GGC
[ENA]
¡û
>WENV183775759
PPYF01070239
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2271
2197
-
Ala
GGC
[ENA]
¡û
>WENV183784244
PPYF01250378
[PPYF] human gut metagenome; stool from patient with Crohn's disease
511
437
-
Ala
GGC
[ENA]
¡û
>WENV170636564
JFBN01302962
[JFBN] chicken gut metagenome; ceca of Broiler chicken
1320
1393
+
Ala
GGC
[ENA]
¡û
>WENV170636685
JFBN01304907
[JFBN] chicken gut metagenome; ceca of Broiler chicken
1611
1685
+
Ala
GGC
[ENA]
¡û
>C191148150
CP036170
Bacillota
[Clostridium] scindens ATCC 35704 [CP036170]
1721976
1721902
-
Ala
GGC
-
¡û
>W141560771
JHXX01000003
Bacillota
Butyrivibrio sp. MC2021 [JHXX]
298364
298291
-
Ala
GGC
[ENA]
¡û
>W09113047
ABYI02000020
Bacillota
[Clostridium] hylemonae DSM 15053 [ABYI]
51559
51633
+
Ala
GGC
[ENA]
¡û
>W2010262650
CABKNF020000001
Bacillota
[Clostridium] scindens [CABKNF]
193474
193548
+
Ala
GGC
[ENA]
¡û
>W2010484881
JAAISN010000002
Bacillota
[Clostridium] scindens MSK.5.24 [JAAISN]
537434
537360
-
Ala
GGC
[ENA]
¡û
>W2010484951
JAAISO010000009
Bacillota
[Clostridium] scindens MSK.1.26 [JAAISO]
21796
21870
+
Ala
GGC
[ENA]
¡û
>W2010485004
JAAISP010000009
Bacillota
[Clostridium] scindens MSK.1.16 [JAAISP]
99961
99887
-
Ala
GGC
[ENA]
¡û
>W2011668803
SPGT01000001
Bacillota
Clostridium sp. BSD2780061688st1 H5 BSD2780061688st1_H5 [SPGT]
75713
75639
-
Ala
GGC
[ENA]
¡û
>W2012154018
VUMB01000007
Bacillota
[Clostridium] scindens BL-389-WT-3D [VUMB]
16477
16551
+
Ala
GGC
[ENA]
¡û
>W2110099063
CAJFFJ010000189
Bacillota
Lachnoclostridium sp. An138 [CAJFFJ]
149
77
-
Ala
GGC
[ENA]
¡û
>W2110099093
CAJFFK010000020
Bacillota
Lachnoclostridium sp. An138 [CAJFFK]
4906
4978
+
Ala
GGC
[ENA]
¡û
>W2110100342
CAJFJO010000051
Bacillota
Lachnoclostridium sp. An118 [CAJFJO]
12396
12470
+
Ala
GGC
[ENA]
¡û
>W2110100576
CAJFKF010000086
Bacillota
Lachnoclostridium sp. An138 [CAJFKF]
5966
5894
-
Ala
GGC
[ENA]
¡û
>W2110101241
CAJFMH010000004
Bacillota
Blautia sp. An81 [CAJFMH]
22632
22705
+
Ala
GGC
[ENA]
¡û
>W2110101298
CAJFML010000071
Bacillota
Eubacterium sp. ER2 [CAJFML]
11029
11103
+
Ala
GGC
[ENA]
¡û
>W2110102759
CAJFSM010000063
Bacillota
Eubacterium sp. ER2 [CAJFSM]
3480
3554
+
Ala
GGC
[ENA]
¡û
>W2110102980
CAJFTJ010000007
Bacillota
Lachnoclostridium sp. An138 [CAJFTJ]
37560
37488
-
Ala
GGC
[ENA]
¡û
>W2110223662
JACJKS010000003
Bacillota
Mordavella massiliensis An582 [JACJKS]
31422
31348
-
Ala
GGC
[ENA]
¡û
>W2110238704
JACLYY010000008
Bacillota
Faecalicatena fissicatena An773 [JACLYY]
33003
33077
+
Ala
GGC
[ENA]
¡û
>W2110258226
JACSNM010000023
Bacillota
Faecalicatena contorta An846 [JACSNM]
8539
8465
-
Ala
GGC
[ENA]
¡û
>W2110258361
JACSNO010000023
Bacillota
Faecalicatena contorta An826 [JACSNO]
36406
36480
+
Ala
GGC
[ENA]
¡û
>W2110303235
JADCKL010000010
Bacillota
Sellimonas monacensis DSM 108991 [JADCKL]
17638
17564
-
Ala
GGC
[ENA]
¡û
>W2110340571
JADMRI010000001
Bacillota
Eubacterium sp. BSD2780061688b_171218_H5 [JADMRI]
75713
75639
-
Ala
GGC
[ENA]
¡û
>C211260706
CP069444
Bacillota
[Clostridium] scindens FDAARGOS_1227 [CP069444]
525588
525514
-
Ala
GGC
-
¡û
>C211378868
CP080442
Bacillota
[Clostridium] scindens Q4 [CP080442]
936213
936139
-
Ala
GGC
-
¡û
>C231005926
AP024845
Bacillota
Eubacterium sp. c-25 [AP024845]
773384
773458
+
Ala
GGC
-
¡û
>C231006032
AP024846
Bacillota
[Clostridium] scindens G10 [AP024846]
687810
687736
-
Ala
GGC
-
¡û
>C231016009
AP025566
Bacillota
[Clostridium] hylemonae CE91-St63 [AP025566]
3171322
3171396
+
Ala
GGC
-
¡û
>C231016183
AP025569
Bacillota
[Clostridium] scindens CE91-St59 [AP025569]
553730
553656
-
Ala
GGC
-
¡û
>C231016239
AP025570
Bacillota
[Clostridium] scindens CE91-St60 [AP025570]
553731
553657
-
Ala
GGC
-
¡û
>C231551775
CP113781
Bacillota
[Clostridium] scindens VPI12708 [CP113781]
1026513
1026439
-
Ala
GGC
-
¡û
>C241012184
AP027742
Bacillota
Claveliimonas bilis 12BBH14 [AP027742]
944085
944011
-
Ala
GGC
-
¡û
>C241012199
AP027743
Bacillota
Claveliimonas bilis 10CPCBH12 [AP027743]
604383
604457
+
Ala
GGC
-
¡û
>C241012279
AP027744
Bacillota
Claveliimonas bilis 9CFEGH4 [AP027744]
3093747
3093673
-
Ala
GGC
-
¡û
>C241099127
CP045695
Bacillota
[Clostridium] scindens BL389WT3D [CP045695]
885148
885074
-
Ala
GGC
-
¡û
>C241376863
CP143935
Bacillota
[Clostridium] scindens SL.1.22 [CP143935]
897579
897505
-
Ala
GGC
-
¡û
>W11105739
ACTR01000031
Bacillota
Lachnospiraceae bacterium 5_1_57FAA [ACTR]
17056
17130
+
Ala
GGC
[ENA]
¡û
>W1511303168
JPJE01000005
Bacillota
Eubacterium sp. ER2 [JPJE]
37490
37564
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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