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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.322068 (12 seq.)
>WENV180398673
OBQA01093632
[OBQA] marine metagenome; PVDF and polycarbonate filters
266
193
-
Glu
TTC
[ENA]
¡û
>WENV181307039
OFIO01010589
[OFIO] marine metagenome; seawater
236
164
-
Glu
TTC
[ENA]
¡û
>WENV181308742
OFIT01012810
[OFIT] marine metagenome; seawater
397
325
-
Glu
TTC
[ENA]
¡û
>WENV181313048
OFJE01003267
[OFJE] marine metagenome; seawater
263
191
-
Glu
TTC
[ENA]
¡û
>WENV181314470
OFJK01003584
[OFJK] marine metagenome; seawater
561
633
+
Glu
TTC
[ENA]
¡û
>WENV181316380
OFJU01000249
[OFJU] marine metagenome; seawater
2594
2522
-
Glu
TTC
[ENA]
¡û
>WENV181318661
OFKA01005221
[OFKA] marine metagenome; seawater
379
451
+
Glu
TTC
[ENA]
¡û
>WENV181320212
OFKG01002080
[OFKG] marine metagenome; seawater
441
369
-
Glu
TTC
[ENA]
¡û
>WENV181403277
OFUA01008374
[OFUA] marine metagenome; seawater
638
710
+
Glu
TTC
[ENA]
¡û
>WENV183059885
OLHW01000304
[OLHW] seawater metagenome; Sea water
4147
4074
-
Glu
TTC
[ENA]
¡û
>WENV170431697
CEUS01048851
[CEUS] marine metagenome genome assembly TARA_125_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
234
307
+
Glu
TTC
[ENA]
¡û
>WENV170567002
FLLY01025973
[FLLY] seawater metagenome; seawater
54
126
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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