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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.322812 (45 seq.)
>W1711736015
MTZT01000001
Bacillota
Lactobacillus gasseri [MTZT]
1105796
1105722
-
Thr
TGT
[ENA]
¡û
>C171121942
CP021704
Bacillota
Lactobacillus johnsonii UMNLJ22 [CP021704]
123006
122932
-
Thr
TGT
-
¡û
>C171121966
CP021704
Bacillota
Lactobacillus johnsonii UMNLJ22 [CP021704]
108554
108480
-
Thr
TGT
-
¡û
>C011869
AE017198
Bacillota
Lactobacillus johnsonii NCC 533 [AE017198]
1680658
1680586
-
Thr
TGT
[Ensembl]
¡û
>C011893
AE017198
Bacillota
Lactobacillus johnsonii NCC 533 [AE017198]
1666209
1666137
-
Thr
TGT
[Ensembl]
¡û
>WENV180186249
OAWU01008704
[OAWU] human gut metagenome; faeces
312
386
+
Thr
TGT
[ENA]
¢þ
>WENV180195230
OAZY01004197
[OAZY] human gut metagenome; faeces
698
624
-
Thr
TGT
[ENA]
¢þ
>WENV180233469
OBCP01000634
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
312
386
+
Thr
TGT
[ENA]
¢þ
>WENV180410631
OBUX01000610
[OBUX] human gut metagenome; faeces
8598
8524
-
Thr
TGT
[ENA]
¢þ
>WENV180640242
OCRL01000997
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
234
308
+
Thr
TGT
[ENA]
¢þ
>WENV180641134
OCRM01000801
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
2226
2152
-
Thr
TGT
[ENA]
¢þ
>WENV181014727
ODWO01000142
[ODWO] human metagenome; G_DNA_Posterior fornix
697
623
-
Thr
TGT
[ENA]
¢þ
>WENV181273826
OFGH01011645
[OFGH] mouse gut metagenome; faeces
2601
2527
-
Thr
TGT
[ENA]
¢þ
>WENV181506508
OGGM01008113
[OGGM] metagenome; Human gut stool
148
74
-
Thr
TGT
[ENA]
¢þ
>WENV182481476
OIRB01005755
[OIRB] human gut metagenome; human gut
293
367
+
Thr
TGT
[ENA]
¢þ
>WENV182487863
OIRX01008991
[OIRX] human gut metagenome; human gut
698
624
-
Thr
TGT
[ENA]
¢þ
>WENV182491313
OISK01000033
[OISK] human gut metagenome; human gut
247
321
+
Thr
TGT
[ENA]
¢þ
>WENV182506518
OIVA01015955
[OIVA] human gut metagenome; human gut
749
823
+
Thr
TGT
[ENA]
¢þ
>WENV182804119
OJUS01000395
[OJUS] human gut metagenome; human gut
790
716
-
Thr
TGT
[ENA]
¢þ
>WENV182831416
OKEE01001954
[OKEE] human gut metagenome; human gut
312
386
+
Thr
TGT
[ENA]
¢þ
>WENV182941388
OKVG01001582
[OKVG] human gut metagenome; human gut
8795
8721
-
Thr
TGT
[ENA]
¢þ
>WENV183473539
OMER01017768
[OMER] human gut metagenome; feces
686
612
-
Thr
TGT
[ENA]
¢þ
>C191206739
LR134325
Bacillota
Lactobacillus paragasseri NCTC13720 [LR134325]
1638050
1637976
-
Thr
TGT
-
¡û
>C191206762
LR134325
Bacillota
Lactobacillus paragasseri NCTC13720 [LR134325]
1623893
1623819
-
Thr
TGT
-
¡û
>W1910901137
NGNW01000138
Bacillota
Lactobacillus taiwanensis 609r [NGNW]
384
458
+
Thr
TGT
[ENA]
¡û
>W1910901169
NGNX01000014
Bacillota
Lactobacillus taiwanensis 609q [NGNX]
384
458
+
Thr
TGT
[ENA]
¡û
>W1910901228
NGNY01000037
Bacillota
Lactobacillus taiwanensis 609h [NGNY]
11349
11275
-
Thr
TGT
[ENA]
¡û
>W1910901441
NGOC01000017
Bacillota
Lactobacillus taiwanensis 601a [NGOC]
11622
11548
-
Thr
TGT
[ENA]
¡û
>W1910901813
NGOJ01000053
Bacillota
Lactobacillus taiwanensis 114t [NGOJ]
10482
10408
-
Thr
TGT
[ENA]
¡û
>W1910901898
NGOL01000004
Bacillota
Lactobacillus taiwanensis 114e [NGOL]
11447
11373
-
Thr
TGT
[ENA]
¡û
>W1910902018
NGON01000051
Bacillota
Lactobacillus taiwanensis 111w [NGON]
384
458
+
Thr
TGT
[ENA]
¡û
>W1910902323
NGOT01000015
Bacillota
Lactobacillus taiwanensis 107u [NGOT]
10482
10408
-
Thr
TGT
[ENA]
¡û
>W1910902478
NGOW01000018
Bacillota
Lactobacillus taiwanensis 103q [NGOW]
11331
11257
-
Thr
TGT
[ENA]
¡û
>W1910902578
NGOY01000008
Bacillota
Lactobacillus taiwanensis 103j [NGOY]
11011
10937
-
Thr
TGT
[ENA]
¡û
>W1910902640
NGOZ01000023
Bacillota
Lactobacillus taiwanensis 103a [NGOZ]
8215
8141
-
Thr
TGT
[ENA]
¡û
>W1910918553
NIBD01000051
Bacillota
Lactobacillus johnsonii UMNLJ114 [NIBD]
1221
1147
-
Thr
TGT
[ENA]
¡û
>W1911594842
PNFW01000039
Bacillota
Lactobacillus gasseri UMB0045b [PNFW]
5700
5774
+
Thr
TGT
[ENA]
¡û
>W1911595896
PNGR01000004
Bacillota
Lactobacillus gasseri UMB0056 [PNGR]
399
473
+
Thr
TGT
[ENA]
¡û
>W1810001291
BEXG01000015
Bacillota
Lactobacillus paragasseri JCM 1130 [BEXG]
1009
935
-
Thr
TGT
[ENA]
¡û
>W1810001410
BEXJ01000007
Bacillota
Lactobacillus gasseri JCM 1025 [BEXJ]
375
449
+
Thr
TGT
[ENA]
¡û
>W1810190736
PKKB01000035
Bacillota
Lactobacillus gasseri UMB0670 [PKKB]
393
467
+
Thr
TGT
[ENA]
¡û
>C10108408
FN298497
Bacillota
Lactobacillus johnsonii FI9785 [FN298497]
1490496
1490422
-
Thr
TGT
[Ensembl]
¡û
>W1610032008
AYZG01000035
Bacillota
Lactobacillus taiwanensis DSM 21401 [AYZG]
313
387
+
Thr
TGT
[ENA]
¡û
>W1610033466
AZCY01000024
Bacillota
Lactobacillus johnsonii ATCC 33200 [AZCY]
289
363
+
Thr
TGT
[ENA]
¡û
>W1710028935
AYZG01000035
Bacillota
Lactobacillus taiwanensis DSM 21401 [AYZG]
313
387
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK