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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.322986 (54 seq.)
>W1710991047
LPXI01000081
Bacteroidota
Myroides marinus [LPXI]
26005
26080
+
Lys
TTT
[ENA]
¡û
>W1710991048
LPXI01000081
Bacteroidota
Myroides marinus [LPXI]
26114
26189
+
Lys
TTT
[ENA]
¡û
>W1710991049
LPXI01000081
Bacteroidota
Myroides marinus [LPXI]
26232
26307
+
Lys
TTT
[ENA]
¡û
>W1710991050
LPXI01000081
Bacteroidota
Myroides marinus [LPXI]
26345
26420
+
Lys
TTT
[ENA]
¡û
>W1710991051
LPXI01000081
Bacteroidota
Myroides marinus [LPXI]
26452
26527
+
Lys
TTT
[ENA]
¡û
>W1710991055
LPXI01000081
Bacteroidota
Myroides marinus [LPXI]
97254
97329
+
Lys
TTT
[ENA]
¡û
>W141008149
AGZK01000027
Bacteroidota
Myroides odoratimimus CCUG 3837 [AGZK]
31225
31150
-
Lys
TTT
[ENA]
¡û
>W141008150
AGZK01000027
Bacteroidota
Myroides odoratimimus CCUG 3837 [AGZK]
31118
31043
-
Lys
TTT
[ENA]
¡û
>W141008152
AGZK01000027
Bacteroidota
Myroides odoratimimus CCUG 3837 [AGZK]
30178
30103
-
Lys
TTT
[ENA]
¡û
>W141008157
AGZK01000028
Bacteroidota
Myroides odoratimimus CCUG 3837 [AGZK]
80
5
-
Lys
TTT
[ENA]
¡û
>WENV180311637
OBJT01436010
[OBJT] soil metagenome; soil
123
196
+
Lys
TTT
[ENA]
¢þ
>WENV181223553
OFDC01032252
[OFDC] hot springs metagenome; Water
240
167
-
Lys
TTT
[ENA]
¢þ
>WENV181836638
OGVJ01016185
[OGVJ] freshwater metagenome; freshwater
602
675
+
Lys
TTT
[ENA]
¢þ
>WENV181836639
OGVJ01016185
[OGVJ] freshwater metagenome; freshwater
698
771
+
Lys
TTT
[ENA]
¢þ
>WENV183736950
PJUD01000121
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
35373
35300
-
Lys
TTT
[ENA]
¢þ
>WENV183736951
PJUD01000121
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
35257
35184
-
Lys
TTT
[ENA]
¢þ
>WENV183736953
PJUD01000121
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
35045
34972
-
Lys
TTT
[ENA]
¢þ
>WENV183739949
PJUF01000096
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
35373
35300
-
Lys
TTT
[ENA]
¢þ
>WENV183739950
PJUF01000096
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
35257
35184
-
Lys
TTT
[ENA]
¢þ
>WENV183739952
PJUF01000096
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
35045
34972
-
Lys
TTT
[ENA]
¢þ
>WENV170015120
AZID01014820
[AZID] marine sediment metagenome; sample MGS-BIZ from oil contaminated site at the Bizerte lagoon located in Northern Tunisia
383
456
+
Lys
TTT
[ENA]
¢þ
>WENV170315859
CESO01305608
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
623
698
+
Lys
TTT
[ENA]
¢þ
>C181175935
CP029187
Bacteroidota
Flavobacterium pallidum HYN0049 [CP029187]
1949114
1949187
+
Lys
TTT
-
¡û
>C181175936
CP029187
Bacteroidota
Flavobacterium pallidum HYN0049 [CP029187]
1949214
1949287
+
Lys
TTT
-
¡û
>C191153091
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
216524
216451
-
Lys
TTT
-
¡û
>C191153092
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
216415
216342
-
Lys
TTT
-
¡û
>C191153093
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
216294
216221
-
Lys
TTT
-
¡û
>C191153094
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
216182
216109
-
Lys
TTT
-
¡û
>C191153095
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
216075
216002
-
Lys
TTT
-
¡û
>C191153097
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
215133
215060
-
Lys
TTT
-
¡û
>W1910578024
JUIX01000029
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
13269
13196
-
Lys
TTT
[ENA]
¡û
>W1910578026
JUIX01000029
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
13074
13001
-
Lys
TTT
[ENA]
¡û
>W1910578027
JUIX01000029
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
12963
12890
-
Lys
TTT
[ENA]
¡û
>C151072904
CP010817
Bacteroidota
Myroides profundi D25 [CP010817]
3200916
3200841
-
Lys
TTT
[Ensembl]
¡û
>C151072905
CP010817
Bacteroidota
Myroides profundi D25 [CP010817]
3200809
3200734
-
Lys
TTT
[Ensembl]
¡û
>C151072906
CP010817
Bacteroidota
Myroides profundi D25 [CP010817]
3200702
3200627
-
Lys
TTT
[Ensembl]
¡û
>C151072908
CP010817
Bacteroidota
Myroides profundi D25 [CP010817]
3199759
3199684
-
Lys
TTT
[Ensembl]
¡û
>W1511481058
JWJO01000012
Bacteroidota
Myroides marinus L41 [JWJO]
36861
36936
+
Lys
TTT
[ENA]
¡û
>W1511481096
JWJO01000065
Bacteroidota
Myroides marinus L41 [JWJO]
16389
16314
-
Lys
TTT
[ENA]
¡û
>W1511481097
JWJO01000065
Bacteroidota
Myroides marinus L41 [JWJO]
16280
16205
-
Lys
TTT
[ENA]
¡û
>W1511481098
JWJO01000065
Bacteroidota
Myroides marinus L41 [JWJO]
16162
16087
-
Lys
TTT
[ENA]
¡û
>W1511481099
JWJO01000065
Bacteroidota
Myroides marinus L41 [JWJO]
16049
15974
-
Lys
TTT
[ENA]
¡û
>W1511481100
JWJO01000065
Bacteroidota
Myroides marinus L41 [JWJO]
15942
15867
-
Lys
TTT
[ENA]
¡û
>W121009257
AGEE01000046
Bacteroidota
Myroides odoratimimus CIP 101113 [AGEE]
31923
31848
-
Lys
TTT
[ENA]
¡û
>W121009259
AGEE01000046
Bacteroidota
Myroides odoratimimus CIP 101113 [AGEE]
30981
30906
-
Lys
TTT
[ENA]
¡û
>W121009263
AGEE01000047
Bacteroidota
Myroides odoratimimus CIP 101113 [AGEE]
80
5
-
Lys
TTT
[ENA]
¡û
>W121009264
AGEE01000048
Bacteroidota
Myroides odoratimimus CIP 101113 [AGEE]
95
20
-
Lys
TTT
[ENA]
¡û
>W1610845719
LPXI01000081
Bacteroidota
Myroides marinus [LPXI]
26005
26080
+
Lys
TTT
[ENA]
¡û
>W1610845720
LPXI01000081
Bacteroidota
Myroides marinus [LPXI]
26114
26189
+
Lys
TTT
[ENA]
¡û
>W1610845721
LPXI01000081
Bacteroidota
Myroides marinus [LPXI]
26232
26307
+
Lys
TTT
[ENA]
¡û
>W1610845722
LPXI01000081
Bacteroidota
Myroides marinus [LPXI]
26345
26420
+
Lys
TTT
[ENA]
¡û
>W1610845723
LPXI01000081
Bacteroidota
Myroides marinus [LPXI]
26452
26527
+
Lys
TTT
[ENA]
¡û
>W1610845727
LPXI01000081
Bacteroidota
Myroides marinus [LPXI]
97254
97329
+
Lys
TTT
[ENA]
¡û
>W1710507363
FMVF01000008
Bacteroidota
Flavobacterium caeni [FMVF]
169056
168981
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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