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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.323063 (48 seq.)
>W1711054711
LRUA01000006
Alphaproteobacteria
Kordiimonas lacus [LRUA]
368562
368638
+
Asp
GTC
[ENA]
¡û
>W1711054712
LRUA01000006
Alphaproteobacteria
Kordiimonas lacus [LRUA]
369369
369445
+
Asp
GTC
[ENA]
¡û
>W1711054767
LRUB01000028
Alphaproteobacteria
Kordiimonas lipolytica [LRUB]
93226
93150
-
Asp
GTC
[ENA]
¡û
>W1711054768
LRUB01000028
Alphaproteobacteria
Kordiimonas lipolytica [LRUB]
92967
92891
-
Asp
GTC
[ENA]
¡û
>W1711793263
MWLM01000022
Alphaproteobacteria
Novosphingobium sp. B 225 [MWLM]
38208
38284
+
Asp
GTC
[ENA]
¡û
>WENV180021017
FTDJ01001282
[FTDJ] metagenome; soil
353
429
+
Asp
GTC
[ENA]
¡û
>WENV180025857
FTIQ01347563
[FTIQ] metagenome; soil
1002
1078
+
Asp
GTC
[ENA]
¡û
>WENV180027521
FTIZ01002577
[FTIZ] metagenome; soil
2690
2766
+
Asp
GTC
[ENA]
¡û
>W141136780
AWGD01000021
Alphaproteobacteria
Asticcacaulis sp. AC460 [AWGD]
68621
68545
-
Asp
GTC
[ENA]
¡û
>W141136812
AWGE01000007
Alphaproteobacteria
Asticcacaulis sp. AC466 [AWGE]
52313
52389
+
Asp
GTC
[ENA]
¡û
>WENV183697253
OUNJ010156400
[OUNJ] metagenome; soil
712
788
+
Asp
GTC
[ENA]
¡û
>WENV170962854
MRWF01028581
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
238481
238405
-
Asp
GTC
[ENA]
¡û
>WENV170962855
MRWF01028581
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
237946
237870
-
Asp
GTC
[ENA]
¡û
>WENV170963049
MRWG01000005
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
454748
454824
+
Asp
GTC
[ENA]
¡û
>WENV170963050
MRWG01000005
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
455283
455359
+
Asp
GTC
[ENA]
¡û
>C191005659
AP018828
Alphaproteobacteria
Asticcacaulis excentricus M6 [AP018827, AP018828]
559390
559314
-
Asp
GTC
-
¡û
>C191005660
AP018828
Alphaproteobacteria
Asticcacaulis excentricus M6 [AP018827, AP018828]
559253
559177
-
Asp
GTC
-
¡û
>W09133873
ACQR01000021
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [ACQR]
51331
51255
-
Asp
GTC
[ENA]
¡û
>W09133874
ACQR01000021
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [ACQR]
51194
51118
-
Asp
GTC
[ENA]
¡û
>W1810121203
PHUF01000002
Alphaproteobacteria
Novosphingobium kunmingense CGMCC 1.12274 [PHUF]
331760
331836
+
Asp
GTC
[ENA]
¡û
>W1810195698
PKRT01000001
Alphaproteobacteria
Novosphingobium sp. TH158 [PKRT]
668122
668046
-
Asp
GTC
[ENA]
¡û
>W1810503507
QBKE01000002
Alphaproteobacteria
Asticcacaulis sp. CF398 [QBKE]
264620
264544
-
Asp
GTC
[ENA]
¡û
>W1810503508
QBKE01000002
Alphaproteobacteria
Asticcacaulis sp. CF398 [QBKE]
264480
264404
-
Asp
GTC
[ENA]
¡û
>W2012438551
WTYA01000004
Alphaproteobacteria
Porphyrobacter algicida KEMB 9005-328 [WTYA]
269942
269866
-
Asp
GTC
[ENA]
¡û
>W2110540642
JAGGMI010000002
Alphaproteobacteria
Asticcacaulis solisilvae BE327 [JAGGMI]
177930
177854
-
Asp
GTC
[ENA]
¡û
>W2110677933
JAIGNN010000001
Alphaproteobacteria
Qipengyuania sp. 6B39 [JAIGNN]
1772269
1772345
+
Asp
GTC
[ENA]
¡û
>W2110677973
JAIGNO010000001
Alphaproteobacteria
Qipengyuania sp. 6D47A [JAIGNO]
582611
582535
-
Asp
GTC
[ENA]
¡û
>W2110678110
JAIGNR010000001
Alphaproteobacteria
Qipengyuania sp. GH29 [JAIGNR]
981750
981826
+
Asp
GTC
[ENA]
¡û
>C211377564
CP080410
Alphaproteobacteria
Qipengyuania flava DP1N28-4 [CP080410]
1453605
1453681
+
Asp
GTC
-
¡û
>C231201043
CP084910
Alphaproteobacteria
Asticcacaulis sp. AND118 [CP084910, CP084911]
1555073
1554997
-
Asp
GTC
-
¡û
>C231201044
CP084910
Alphaproteobacteria
Asticcacaulis sp. AND118 [CP084910, CP084911]
1554935
1554859
-
Asp
GTC
-
¡û
>C11100709
CP002396
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [CP002395, CP002396]
478934
478858
-
Asp
GTC
[Ensembl]
¡û
>C11100710
CP002396
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [CP002395, CP002396]
478797
478721
-
Asp
GTC
[Ensembl]
¡û
>W1511398028
JTDI01000003
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
626387
626311
-
Asp
GTC
[ENA]
¡û
>W1511398029
JTDI01000003
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
626239
626163
-
Asp
GTC
[ENA]
¡û
>W11123392
ADUH01000251
Alphaproteobacteria
Asticcacaulis biprosthecium C19 [ADUH]
63445
63521
+
Asp
GTC
[ENA]
¡û
>W1610071240
BCTX01000041
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
191
115
-
Asp
GTC
[ENA]
¡û
>W1610071246
BCTX01000054
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
31012
30936
-
Asp
GTC
[ENA]
¡û
>W1610895757
LRUA01000006
Alphaproteobacteria
Kordiimonas lacus [LRUA]
368562
368638
+
Asp
GTC
[ENA]
¡û
>W1610895758
LRUA01000006
Alphaproteobacteria
Kordiimonas lacus [LRUA]
369369
369445
+
Asp
GTC
[ENA]
¡û
>W1610895813
LRUB01000028
Alphaproteobacteria
Kordiimonas lipolytica [LRUB]
93226
93150
-
Asp
GTC
[ENA]
¡û
>W1610895814
LRUB01000028
Alphaproteobacteria
Kordiimonas lipolytica [LRUB]
92967
92891
-
Asp
GTC
[ENA]
¡û
>W1710068605
BCTX01000041
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
191
115
-
Asp
GTC
[ENA]
¡û
>W1710068611
BCTX01000054
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
31012
30936
-
Asp
GTC
[ENA]
¡û
>W1710505457
FMTS01000001
Alphaproteobacteria
Asticcacaulis taihuensis [FMTS]
214084
214160
+
Asp
GTC
[ENA]
¡û
>W1710505458
FMTS01000001
Alphaproteobacteria
Asticcacaulis taihuensis [FMTS]
214362
214438
+
Asp
GTC
[ENA]
¡û
>W1710513764
FNAK01000002
Alphaproteobacteria
Kordiimonas lacus [FNAK]
366189
366265
+
Asp
GTC
[ENA]
¡û
>W1710513765
FNAK01000002
Alphaproteobacteria
Kordiimonas lacus [FNAK]
366996
367072
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK