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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.323212 (63 seq.)
>W1711007365
LQPC01000030
Actinomycetota
Mycolicibacterium iranicum [LQPC]
24576
24651
+
Lys
TTT
[ENA]
¡û
>W1711007572
LQPG01000020
Actinomycetota
Mycolicibacter longobardus longobardum [LQPG]
47603
47528
-
Lys
TTT
[ENA]
¡û
>W1711007647
LQPI01000033
Actinomycetota
Mycolicibacter nonchromogenicus nonchromogenicum [LQPI]
74233
74308
+
Lys
TTT
[ENA]
¡û
>W1711008146
LQPS01000051
Actinomycetota
Mycolicibacter senuensis senuense [LQPS]
78461
78386
-
Lys
TTT
[ENA]
¡û
>W1711173231
LWCS01000001
Actinomycetota
Mycolicibacterium iranicum [LWCS]
74300
74375
+
Lys
TTT
[ENA]
¡û
>W1711276924
LZIN01000054
Actinomycetota
Mycolicibacter sinensis sinense [LZIN]
1395
1470
+
Lys
TTT
[ENA]
¡û
>W1711278051
LZJK01000159
Actinomycetota
Mycolicibacter sinensis sinense [LZJK]
37396
37471
+
Lys
TTT
[ENA]
¡û
>W1711278834
LZKB01000137
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZKB]
48552
48477
-
Lys
TTT
[ENA]
¡û
>W1711281425
LZME01000060
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZME]
1249
1324
+
Lys
TTT
[ENA]
¡û
>W1711281468
LZMF01000027
Actinomycetota
Mycolicibacter sinensis sinense [LZMF]
13170
13245
+
Lys
TTT
[ENA]
¡û
>W1711325428
MBEL01000022
Actinomycetota
Mycolicibacter heraklionensis heraklionense [MBEL]
31449
31374
-
Lys
TTT
[ENA]
¡û
>W131229926
AUHE01000007
Actinomycetota
Gordonia shandongensis DSM 45094 [AUHE]
2951
2878
-
Lys
TTT
[ENA]
¡û
>W141089978
AUWR01000011
Actinomycetota
Mycobacterium sp. UM_WGJ [AUWR]
149549
149474
-
Lys
TTT
[ENA]
¡û
>W141090108
AUWT01000055
Actinomycetota
Mycolicibacterium iranicum UM_TJL [AUWT]
24487
24562
+
Lys
TTT
[ENA]
¡û
>WENV170578066
FSSH01009359
[FSSH] freshwater metagenome; drinking water
347
272
-
Lys
TTT
[ENA]
¡û
>C181226048
LT906469
Actinomycetota
Mycolicibacter terrae NCTC10856 [LT906469]
779477
779403
-
Lys
TTT
-
¡û
>C191208555
LR134355
Actinomycetota
Mycolicibacterium chitae NCTC10485 [LR134355]
724538
724463
-
Lys
TTT
-
¡û
>W2011578544
SGXK01000001
Actinomycetota
Mycobacterium sp. BK558 [SGXK]
1278125
1278052
-
Lys
TTT
[ENA]
¡û
>W2011616593
SKBT01000001
Actinomycetota
Gordonia sp. HY189 [SKBT]
2046819
2046892
+
Lys
TTT
[ENA]
¡û
>W2011650125
SNYA01000009
Actinomycetota
Leucobacter luti JUb18 [SNYA]
121776
121703
-
Lys
TTT
[ENA]
¡û
>W2011694560
STGE01000049
Actinomycetota
Mycolicibacterium sp. CR10 [STGE]
38435
38509
+
Lys
TTT
[ENA]
¡û
>W2011760975
UATB01000015
Actinomycetota
Mycolicibacterium chubuense NCTC10819 [UATB]
437209
437282
+
Lys
TTT
[ENA]
¡û
>C211383225
CP080997
Actinomycetota
Mycolicibacter heraklionensis JCM 30995 [CP080997]
872083
872008
-
Lys
TTT
-
¡û
>C231316456
CP092427
Actinomycetota
Mycobacterium rufum JCM 16372 [CP092427]
3924389
3924316
-
Lys
TTT
-
¡û
>C231316563
CP092430
Actinomycetota
Mycobacterium virginiense DSM 100883 [CP092430]
846948
846873
-
Lys
TTT
-
¡û
>C231516522
CP107551
Actinomycetota
Rhodococcus sp. Z13 [CP107551]
714636
714563
-
Lys
TTT
-
¡û
>C241005968
AP022564
Actinomycetota
Mycolicibacter terrae JCM 12143 [AP022564]
3480693
3480767
+
Lys
TTT
-
¡û
>C241006031
AP022589
Actinomycetota
Mycolicibacter minnesotensis JCM 17932 [AP022589]
2536683
2536608
-
Lys
TTT
-
¡û
>C241006168
AP022609
Actinomycetota
Mycolicibacter hiberniae JCM 13571 [AP022609]
263798
263723
-
Lys
TTT
-
¡û
>C241061064
CP041763
Actinomycetota
Gordonia zhaorongruii HY186 [CP041763]
571292
571365
+
Lys
TTT
-
¡û
>C241218355
CP109596
Actinomycetota
Nocardia sp. NBC_01503 [CP109596]
1836110
1836184
+
Lys
TTT
-
¡û
>W1510651813
CVTC01000890
Actinomycetota
Mycolicibacter nonchromogenicus NCK 8460 [CVTC]
190
265
+
Lys
TTT
[ENA]
¡û
>W1511350523
JRMK01000024
Actinomycetota
Mycobacterium sp. UM_Kg1 [JRMK]
33967
33892
-
Lys
TTT
[ENA]
¡û
>W1511350612
JRMM01000020
Actinomycetota
Mycobacterium sp. UM_Kg27 [JRMM]
597
672
+
Lys
TTT
[ENA]
¡û
>W1511350645
JRMN01000002
Actinomycetota
Mycobacterium sp. UM_NZ2 [JRMN]
16803
16878
+
Lys
TTT
[ENA]
¡û
>W1511352210
JROA01000001
Actinomycetota
Mycolicibacterium rufum JS14 [JROA]
4868175
4868248
+
Lys
TTT
[ENA]
¡û
>W1511533991
JYNL01000069
Actinomycetota
Mycolicibacterium chlorophenolicum DSM 43826 [JYNL]
764643
764716
+
Lys
TTT
[ENA]
¡û
>W1511534426
JYNX01000066
Actinomycetota
Mycolicibacterium chubuense DSM 44219 [JYNX]
36093
36166
+
Lys
TTT
[ENA]
¡û
>W1511582419
LASW02000069
Actinomycetota
Mycolicibacter arupensis GUC1 [LASW]
4163
4088
-
Lys
TTT
[ENA]
¡û
>W1511639825
LDPO01000001
Actinomycetota
Mycolicibacter heraklionensis Davo [LDPO]
590521
590596
+
Lys
TTT
[ENA]
¡û
>C121004704
CP003053
Actinomycetota
Mycolicibacterium chubuense NBB4 [CP003053]
4686148
4686223
+
Lys
TTT
[Ensembl]
¡û
>W1610050630
BBGB01000012
Actinomycetota
Mycolicibacterium chlorophenolicum JCM 7439 = NBRC 15527 [BBGB]
13224
13297
+
Lys
TTT
[ENA]
¡û
>W1610051307
BBGS01002035
Actinomycetota
Mycolicibacterium rufum JCM 16372 [BBGS]
167
94
-
Lys
TTT
[ENA]
¡û
>W1610074571
BCWU01000005
Actinomycetota
Gordonia hydrophobica NBRC 16057 [BCWU]
24136
24209
+
Lys
TTT
[ENA]
¡û
>W1610078407
BDAW01000024
Actinomycetota
Nocardia acidivorans NBRC 108247 [BDAW]
56833
56908
+
Lys
TTT
[ENA]
¡û
>C131002031
CP003078
Actinomycetota
Mycobacterium sp. JS623 [CP003078]
5551414
5551489
+
Lys
TTT
[Ensembl]
¡û
>W1610601104
LFOE01000074
Actinomycetota
Mycolicibacter kumamotonensis kumamotonense [LFOE]
9722
9649
-
Lys
TTT
[ENA]
¡û
>W1610742150
LMRX01000023
Actinomycetota
Mycobacterium sp. Soil538 [LMRX]
157927
158000
+
Lys
TTT
[ENA]
¡û
>W1610981836
LWCS01000001
Actinomycetota
Mycolicibacterium iranicum [LWCS]
74300
74375
+
Lys
TTT
[ENA]
¡û
>W1611036159
LZIM01000049
Actinomycetota
Mycolicibacter sinensis sinense [LZIM]
45234
45159
-
Lys
TTT
[ENA]
¡û
>W1611036209
LZIN01000054
Actinomycetota
Mycolicibacter sinensis sinense [LZIN]
1395
1470
+
Lys
TTT
[ENA]
¡û
>W1611036537
LZIU01000014
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZIU]
123465
123540
+
Lys
TTT
[ENA]
¡û
>W1611037336
LZJK01000159
Actinomycetota
Mycolicibacter sinensis sinense [LZJK]
37396
37471
+
Lys
TTT
[ENA]
¡û
>W1611038119
LZKB01000137
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZKB]
48552
48477
-
Lys
TTT
[ENA]
¡û
>W1611038332
LZKG01000056
Actinomycetota
Mycolicibacter sinensis sinense [LZKG]
46262
46187
-
Lys
TTT
[ENA]
¡û
>W1611039357
LZLB01000051
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZLB]
90787
90712
-
Lys
TTT
[ENA]
¡û
>W1611040710
LZME01000060
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZME]
1249
1324
+
Lys
TTT
[ENA]
¡û
>W1611040753
LZMF01000027
Actinomycetota
Mycolicibacter sinensis sinense [LZMF]
13170
13245
+
Lys
TTT
[ENA]
¡û
>W1710047029
BBGB01000012
Actinomycetota
Mycolicibacterium chlorophenolicum JCM 7439 = NBRC 15527 [BBGB]
13224
13297
+
Lys
TTT
[ENA]
¡û
>W1710047706
BBGS01002035
Actinomycetota
Mycolicibacterium rufum JCM 16372 [BBGS]
167
94
-
Lys
TTT
[ENA]
¡û
>W1710071689
BCWU01000005
Actinomycetota
Gordonia hydrophobica NBRC 16057 [BCWU]
24136
24209
+
Lys
TTT
[ENA]
¡û
>W1710076966
BDAW01000024
Actinomycetota
Nocardia acidivorans NBRC 108247 [BDAW]
56833
56908
+
Lys
TTT
[ENA]
¡û
>W1710722620
LFOE01000074
Actinomycetota
Mycolicibacter kumamotonensis kumamotonense [LFOE]
9722
9649
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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