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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.323255 (140 seq.)
>W1711581258
MNTW01000006
Thermodesulfobacteriota
Desulfovibrio piger [MNTW]
118667
118591
-
Trp
CCA
[ENA]
¡û
>W1712038653
NFJC01000001
Thermodesulfobacteriota
Desulfovibrio sp. An276 [NFJC]
31653
31729
+
Trp
CCA
[ENA]
¡û
>C171129797
LT630450
Thermodesulfobacteriota
Desulfovibrio piger [LT630450]
1168104
1168180
+
Trp
CCA
-
¡û
>WENV180223313
OBBG01001600
[OBBG] human gut metagenome; human gut
1986
2062
+
Trp
CCA
[ENA]
¡û
>WENV180278572
OBHX01005632
[OBHX] metagenome; feces
6536
6460
-
Trp
CCA
[ENA]
¡û
>WENV180544058
OCIP01000524
[OCIP] human gut metagenome; human gut
3192
3268
+
Trp
CCA
[ENA]
¡û
>WENV180665779
OCVV011194728
[OCVV] gut metagenome; gut
1641
1565
-
Trp
CCA
[ENA]
¡û
>WENV180665780
OCVV011194728
[OCVV] gut metagenome; gut
1641
1565
-
Trp
CCA
[ENA]
¡û
>WENV180963697
ODUN01353590
[ODUN] human metagenome; G_DNA_Stool
81
5
-
Trp
CCA
[ENA]
¡û
>WENV180995645
ODVR01007597
[ODVR] human metagenome; G_DNA_Stool
626
550
-
Trp
CCA
[ENA]
¡û
>WENV181116426
OEFA01005028
[OEFA] human gut metagenome; human gut
1081
1157
+
Trp
CCA
[ENA]
¡û
>WENV181132718
OEGE01010754
[OEGE] human metagenome; G_DNA_Stool
511
587
+
Trp
CCA
[ENA]
¡û
>WENV181332941
OFMA01014072
[OFMA] human gut metagenome; human gut
1043
967
-
Trp
CCA
[ENA]
¡û
>WENV181433670
OGDE01040255
[OGDE] metagenome; Human gut stool
128
52
-
Trp
CCA
[ENA]
¡û
>WENV181434673
OGDF01001239
[OGDF] human gut metagenome; human gut
30231
30155
-
Trp
CCA
[ENA]
¡û
>WENV181477997
OGFF01009440
[OGFF] metagenome; Human gut stool
1298
1374
+
Trp
CCA
[ENA]
¡û
>WENV181505660
OGGK01058896
[OGGK] metagenome; Human gut stool
434
358
-
Trp
CCA
[ENA]
¡û
>WENV181540079
OGIA01003161
[OGIA] metagenome; Human gut stool
412
488
+
Trp
CCA
[ENA]
¡û
>WENV181545562
OGIG01094503
[OGIG] metagenome; Human gut stool
315
391
+
Trp
CCA
[ENA]
¡û
>WENV181564810
OGJH01035253
[OGJH] metagenome; Human gut stool
523
447
-
Trp
CCA
[ENA]
¡û
>WENV181578129
OGJY01000406
[OGJY] metagenome; Human gut stool
48994
49070
+
Trp
CCA
[ENA]
¡û
>WENV181604420
OGLI01062044
[OGLI] metagenome; Human gut stool
429
505
+
Trp
CCA
[ENA]
¡û
>WENV181609388
OGLN01024938
[OGLN] metagenome; Human gut stool
839
763
-
Trp
CCA
[ENA]
¡û
>WENV181621532
OGMF01007778
[OGMF] metagenome; Human gut stool
2744
2820
+
Trp
CCA
[ENA]
¡û
>WENV181637069
OGNB01000954
[OGNB] metagenome; Human gut stool
6849
6773
-
Trp
CCA
[ENA]
¡û
>WENV181666300
OGOJ01039145
[OGOJ] human gut metagenome; faeces
534
458
-
Trp
CCA
[ENA]
¡û
>WENV181669429
OGOL01031814
[OGOL] human gut metagenome; faeces
785
709
-
Trp
CCA
[ENA]
¡û
>WENV181718900
OGPT01077061
[OGPT] human gut metagenome; faeces
504
580
+
Trp
CCA
[ENA]
¡û
>WENV181834013
OGUQ01023536
[OGUQ] metagenome; Human gut stool
484
408
-
Trp
CCA
[ENA]
¡û
>WENV181865517
OGWU01035668
[OGWU] human gut metagenome; faeces
129
205
+
Trp
CCA
[ENA]
¡û
>WENV181866609
OGWV01009512
[OGWV] human gut metagenome; faeces
4155
4079
-
Trp
CCA
[ENA]
¡û
>WENV181871262
OGWZ01000047
[OGWZ] human gut metagenome; faeces
87268
87192
-
Trp
CCA
[ENA]
¡û
>WENV181877440
OGXD01008686
[OGXD] human gut metagenome; faeces
1960
2036
+
Trp
CCA
[ENA]
¡û
>WENV181883778
OGXI01012169
[OGXI] human gut metagenome; faeces
2998
2922
-
Trp
CCA
[ENA]
¡û
>WENV181891470
OGXO01024423
[OGXO] human gut metagenome; faeces
1387
1311
-
Trp
CCA
[ENA]
¡û
>WENV181898246
OGXT01003115
[OGXT] human gut metagenome; faeces
4187
4263
+
Trp
CCA
[ENA]
¡û
>WENV181902484
OGXW01033220
[OGXW] human gut metagenome; faeces
1073
997
-
Trp
CCA
[ENA]
¡û
>WENV181902902
OGXX01000083
[OGXX] human gut metagenome; faeces
68402
68478
+
Trp
CCA
[ENA]
¡û
>WENV181906966
OGXZ01014326
[OGXZ] human gut metagenome; faeces
1050
1126
+
Trp
CCA
[ENA]
¡û
>WENV181913775
OGYE01025749
[OGYE] human gut metagenome; faeces
377
453
+
Trp
CCA
[ENA]
¡û
>WENV181919001
OGYI01000061
[OGYI] human gut metagenome; faeces
72906
72830
-
Trp
CCA
[ENA]
¡û
>WENV181930123
OGYP01000556
[OGYP] human gut metagenome; faeces
6226
6302
+
Trp
CCA
[ENA]
¡û
>WENV181943090
OGYZ01003334
[OGYZ] human gut metagenome; faeces
490
566
+
Trp
CCA
[ENA]
¡û
>WENV181953669
OGZI01016988
[OGZI] human gut metagenome; faeces
1199
1123
-
Trp
CCA
[ENA]
¡û
>WENV181955850
OGZK01009477
[OGZK] human gut metagenome; faeces
4535
4459
-
Trp
CCA
[ENA]
¡û
>WENV181960396
OGZO01000030
[OGZO] human gut metagenome; faeces
42083
42159
+
Trp
CCA
[ENA]
¡û
>WENV181978284
OHAE01006598
[OHAE] human gut metagenome; faeces
2196
2272
+
Trp
CCA
[ENA]
¡û
>WENV181980453
OHAF01034207
[OHAF] human gut metagenome; faeces
818
742
-
Trp
CCA
[ENA]
¡û
>WENV181986111
OHAJ01036448
[OHAJ] human gut metagenome; faeces
86
10
-
Trp
CCA
[ENA]
¡û
>WENV181991498
OHAQ01002904
[OHAQ] human gut metagenome; faeces
2778
2854
+
Trp
CCA
[ENA]
¡û
>WENV181995399
OHAT01002646
[OHAT] human gut metagenome; faeces
12678
12602
-
Trp
CCA
[ENA]
¡û
>WENV182005820
OHBE01020682
[OHBE] human gut metagenome; faeces
794
870
+
Trp
CCA
[ENA]
¡û
>WENV182011537
OHBM01001564
[OHBM] human gut metagenome; faeces
8474
8398
-
Trp
CCA
[ENA]
¡û
>WENV182111754
OHIS01011338
[OHIS] human gut metagenome; feces
1011
935
-
Trp
CCA
[ENA]
¡û
>WENV182128672
OHJY01013851
[OHJY] human gut metagenome; feces
356
432
+
Trp
CCA
[ENA]
¡û
>WENV182364834
OICH01042911
[OICH] human gut metagenome; feces
82
6
-
Trp
CCA
[ENA]
¡û
>WENV182510072
OIWK01000590
[OIWK] human gut metagenome; faeces
30653
30577
-
Trp
CCA
[ENA]
¡û
>WENV182517724
OIWO01030114
[OIWO] human gut metagenome; faeces
48
124
+
Trp
CCA
[ENA]
¡û
>WENV182528197
OIWU01002038
[OIWU] human gut metagenome; faeces
16905
16981
+
Trp
CCA
[ENA]
¡û
>WENV182537532
OIXH01009622
[OIXH] human gut metagenome; faeces
2500
2576
+
Trp
CCA
[ENA]
¡û
>WENV182617181
OJKC01128874
[OJKC] metagenome; faeces
176
252
+
Trp
CCA
[ENA]
¡û
>WENV182655736
OJMI01077022
[OJMI] human gut metagenome; feces
647
723
+
Trp
CCA
[ENA]
¡û
>WENV182711099
OJPD01004969
[OJPD] human gut metagenome; stool sample
1196
1120
-
Trp
CCA
[ENA]
¡û
>WENV182720084
OJPN01002706
[OJPN] human gut metagenome; stool sample
490
566
+
Trp
CCA
[ENA]
¡û
>WENV182725578
OJPT01005584
[OJPT] human gut metagenome; stool sample
1494
1570
+
Trp
CCA
[ENA]
¡û
>WENV182726570
OJPU01018200
[OJPU] human gut metagenome; stool sample
192
268
+
Trp
CCA
[ENA]
¡û
>WENV182727687
OJPW01000086
[OJPW] human gut metagenome; stool sample
3243
3167
-
Trp
CCA
[ENA]
¡û
>WENV182731748
OJQA01003765
[OJQA] human gut metagenome; stool sample
1085
1161
+
Trp
CCA
[ENA]
¡û
>WENV182740452
OJQL01016143
[OJQL] human gut metagenome; stool sample
1084
1160
+
Trp
CCA
[ENA]
¡û
>WENV182752638
OJRB01029659
[OJRB] human gut metagenome; stool sample
524
448
-
Trp
CCA
[ENA]
¡û
>WENV182763578
OJRO01023687
[OJRO] human gut metagenome; stool sample
397
321
-
Trp
CCA
[ENA]
¡û
>WENV182881632
OKSA01019834
[OKSA] human gut metagenome; faeces
757
833
+
Trp
CCA
[ENA]
¡û
>WENV182882564
OKSB01000766
[OKSB] human gut metagenome; faeces
25104
25180
+
Trp
CCA
[ENA]
¡û
>WENV182893020
OKSI01028537
[OKSI] human gut metagenome; feces
299
375
+
Trp
CCA
[ENA]
¡û
>WENV182902571
OKSW01019319
[OKSW] human gut metagenome; feces
635
559
-
Trp
CCA
[ENA]
¡û
>WENV183027138
OLFU01027442
[OLFU] human gut metagenome; faeces
398
474
+
Trp
CCA
[ENA]
¡û
>WENV183029647
OLFW01001012
[OLFW] human gut metagenome; faeces
18798
18874
+
Trp
CCA
[ENA]
¡û
>WENV183032643
OLFY01000389
[OLFY] human gut metagenome; faeces
64965
65041
+
Trp
CCA
[ENA]
¡û
>WENV183034300
OLFZ01000008
[OLFZ] human gut metagenome; faeces
213360
213284
-
Trp
CCA
[ENA]
¡û
>WENV183037841
OLGA01096338
[OLGA] human gut metagenome; faeces
415
491
+
Trp
CCA
[ENA]
¡û
>WENV183075060
OLIV01008137
[OLIV] human gut metagenome; stool sample
423
499
+
Trp
CCA
[ENA]
¡û
>WENV183180572
OLPI01000484
[OLPI] human gut metagenome; faeces
28717
28641
-
Trp
CCA
[ENA]
¡û
>WENV183192785
OLPS01000767
[OLPS] human gut metagenome; faeces
28690
28614
-
Trp
CCA
[ENA]
¡û
>WENV183258509
OLRN01007445
[OLRN] human gut metagenome; faeces
960
884
-
Trp
CCA
[ENA]
¡û
>WENV183269879
OLRV01001855
[OLRV] human gut metagenome; faeces
2035
1959
-
Trp
CCA
[ENA]
¡û
>WENV183275383
OLRY01042627
[OLRY] human gut metagenome; faeces
367
443
+
Trp
CCA
[ENA]
¡û
>WENV183277137
OLSA01000098
[OLSA] human gut metagenome; faeces
46904
46828
-
Trp
CCA
[ENA]
¡û
>WENV183339035
OLWK01009058
[OLWK] human gut metagenome; feces
2012
2088
+
Trp
CCA
[ENA]
¡û
>WENV183340591
OLWL01019444
[OLWL] human gut metagenome; feces
876
800
-
Trp
CCA
[ENA]
¡û
>WENV183358445
OLXG01076691
[OLXG] human gut metagenome; feces
119
43
-
Trp
CCA
[ENA]
¡û
>WENV183360218
OLXI01008804
[OLXI] human gut metagenome; feces
2875
2799
-
Trp
CCA
[ENA]
¡û
>WENV183493191
OMGI01011905
[OMGI] human gut metagenome; human gut
81
157
+
Trp
CCA
[ENA]
¡û
>WENV183501344
OMGS01000078
[OMGS] human gut metagenome; human gut
12782
12706
-
Trp
CCA
[ENA]
¡û
>WENV183574776
OOCI01000015
[OOCI] human gut metagenome; human gut
205464
205388
-
Trp
CCA
[ENA]
¡û
>WENV183597585
OODF01001083
[OODF] human gut metagenome; human gut
406
482
+
Trp
CCA
[ENA]
¡û
>WENV183601093
OODJ01000234
[OODJ] human gut metagenome; human gut
3118
3042
-
Trp
CCA
[ENA]
¡û
>WENV183603834
OODL01000304
[OODL] human gut metagenome; human gut
3558
3482
-
Trp
CCA
[ENA]
¡û
>WENV183632629
OOIF01008471
[OOIF] human gut metagenome; human gut
842
918
+
Trp
CCA
[ENA]
¡û
>WENV183634014
OOIG01006174
[OOIG] human gut metagenome; human gut
3094
3018
-
Trp
CCA
[ENA]
¡û
>WENV183786975
PPYF01309611
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3284
3208
-
Trp
CCA
[ENA]
¡û
>WENV183788998
PPYF01372555
[PPYF] human gut metagenome; stool from patient with Crohn's disease
736
812
+
Trp
CCA
[ENA]
¡û
>WENV170026268
CDTW01030254
[CDTW] gut metagenome; human stools
81
5
-
Trp
CCA
[ENA]
¡û
>WENV170033856
CDYK01034704
[CDYK] gut metagenome; human stools
30
106
+
Trp
CCA
[ENA]
¡û
>WENV170035342
CDYM01012981
[CDYM] gut metagenome; human stools
445
369
-
Trp
CCA
[ENA]
¡û
>WENV170039582
CDYR01048561
[CDYR] gut metagenome; human stools
1833
1909
+
Trp
CCA
[ENA]
¡û
>WENV170053587
CDZD01034689
[CDZD] gut metagenome; human stools
91
15
-
Trp
CCA
[ENA]
¡û
>WENV170057398
CDZG01036947
[CDZG] gut metagenome; human stools
2676
2600
-
Trp
CCA
[ENA]
¡û
>WENV170060127
CDZH01075300
[CDZH] gut metagenome; human stools
6064
5988
-
Trp
CCA
[ENA]
¡û
>WENV170061783
CDZI01063637
[CDZI] gut metagenome; human stools
282
358
+
Trp
CCA
[ENA]
¡û
>WENV170074799
CDZT01009371
[CDZT] gut metagenome; human stools
9178
9102
-
Trp
CCA
[ENA]
¡û
>WENV170076933
CDZU01017364
[CDZU] gut metagenome; human stools
1127
1203
+
Trp
CCA
[ENA]
¡û
>WENV170079172
CDZV01055009
[CDZV] gut metagenome; human stools
9115
9039
-
Trp
CCA
[ENA]
¡û
>WENV170089384
CEAF01005215
[CEAF] gut metagenome; human stools
407
483
+
Trp
CCA
[ENA]
¡û
>WENV170092969
CEAH01005786
[CEAH] gut metagenome; human stools
521
597
+
Trp
CCA
[ENA]
¡û
>WENV170101832
CEAR01049392
[CEAR] gut metagenome; human stools
560
484
-
Trp
CCA
[ENA]
¡û
>WENV170715698
LQAB01011345
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
5152
5228
+
Trp
CCA
[ENA]
¡û
>W09112337
ABXU01000003
Thermodesulfobacteriota
Desulfovibrio piger ATCC 29098 [ABXU]
21462
21386
-
Trp
CCA
[ENA]
¡û
>W09118229
ACCT01000003
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 [ACCT]
81137
81061
-
Trp
CCA
[ENA]
¡û
>C181081081
CP023415
Thermodesulfobacteriota
Desulfovibrio sp. G11 [CP023415]
1054427
1054351
-
Trp
CCA
-
¡û
>C09103840
CP001358
Thermodesulfobacteriota
Desulfovibrio desulfuricans [CP001358]
1957243
1957319
+
Trp
CCA
[Ensembl]
¡û
>W2010262350
CABKMQ020000003
Thermodesulfobacteriota
Desulfovibrionaceae bacterium [CABKMQ]
1890085
1890009
-
Trp
CCA
[ENA]
¡û
>W2010264084
CABKOD020000047
Thermodesulfobacteriota
Desulfovibrio piger [CABKOD]
86600
86524
-
Trp
CCA
[ENA]
¡û
>W2010492267
JAAKEH010000019
Thermodesulfobacteriota
Desulfovibrio sp. ZJ200 [JAAKEH]
16510
16586
+
Trp
CCA
[ENA]
¡û
>W2010492311
JAAKEI010000006
Thermodesulfobacteriota
Desulfovibrio sp. ZJ369 [JAAKEI]
80146
80070
-
Trp
CCA
[ENA]
¡û
>W2010492379
JAAKEJ010000005
Thermodesulfobacteriota
Desulfovibrio sp. ZJ209 [JAAKEJ]
186864
186788
-
Trp
CCA
[ENA]
¡û
>W2010492424
JAAKEK010000005
Thermodesulfobacteriota
Desulfovibrio sp. ZJ746 [JAAKEK]
186864
186788
-
Trp
CCA
[ENA]
¡û
>W2012154372
VUMH01000001
Thermodesulfobacteriota
Desulfovibrio sp. PG-178-WT-4 [VUMH]
286547
286623
+
Trp
CCA
[ENA]
¡û
>W2110127229
CAJTFO010000002
Thermodesulfobacteriota
Desulfovibrionaceae bacterium [CAJTFO]
512470
512394
-
Trp
CCA
[ENA]
¡û
>W2110225099
JACJLW010000001
Thermodesulfobacteriota
Desulfovibrio piger An418 [JACJLW]
94430
94354
-
Trp
CCA
[ENA]
¡û
>W2110225233
JACJLY010000002
Thermodesulfobacteriota
Desulfovibrio piger An401 [JACJLY]
49741
49817
+
Trp
CCA
[ENA]
¡û
>C211424268
LT984798
Thermodesulfobacteriota
Desulfovibrio sp. G11 [LT984798]
2545235
2545159
-
Trp
CCA
-
¡û
>W10111709
ADDR01000130
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
36318
36394
+
Trp
CCA
[ENA]
¡û
>C241390264
OX636706
Thermodesulfobacteriota
Desulfovibrio piger [OX636706]
1769555
1769479
-
Trp
CCA
-
¡û
>W2310016773
BQNH01000001
Thermodesulfobacteriota
Desulfovibrionaceae bacterium CE91-St38 [BQNH]
184432
184356
-
Trp
CCA
[ENA]
¡û
>W11106999
ACWM01000018
Thermodesulfobacteriota
Desulfovibrio sp. 6_1_46AFAA [ACWM]
49556
49632
+
Trp
CCA
[ENA]
¡û
>W11114636
ADDR01000130
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
36318
36394
+
Trp
CCA
[ENA]
¡û
>C161069008
CP014229
Thermodesulfobacteriota
Desulfovibrio fairfieldensis CCUG 45958 [CP014229]
865865
865789
-
Trp
CCA
[Ensembl]
¡û
>WENV082555
BAAV01017778
Gut microbiome of Human (healthy human sample F1-T, Adult, Female)
459
537
+
Trp
CCA
[ENA]
>W1710515580
FNBX01000001
Thermodesulfobacteriota
Desulfovibrio legallii [FNBX]
242138
242062
-
Trp
CCA
[ENA]
¡û
>W1710579860
FPIW01000013
Thermodesulfobacteriota
Desulfovibrio desulfuricans [FPIW]
4000
3924
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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