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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.323280 (42 seq.)
>W1712036110
NFHH01000006
Bacillota
Blautia sp. An81 [NFHH]
41788
41714
-
Arg
TCT
[ENA]
¡û
>W1712037447
NFIF01000009
Bacillota
Blautia sp. An46 [NFIF]
76883
76957
+
Arg
TCT
[ENA]
¡û
>WENV180123437
OASW01002311
[OASW] human gut metagenome; faeces
331
406
+
Arg
TCT
[ENA]
¡û
>WENV180125998
OASZ01000305
[OASZ] human gut metagenome; faeces
34811
34736
-
Arg
TCT
[ENA]
¡û
>WENV180148344
OAUK01000023
[OAUK] human gut metagenome; faeces
54213
54138
-
Arg
TCT
[ENA]
¡û
>WENV180306316
OBJP01000319
[OBJP] human gut metagenome; human gut
1382
1307
-
Arg
TCT
[ENA]
¡û
>WENV180446510
OBXC01000217
[OBXC] human gut metagenome; faeces
12954
12879
-
Arg
TCT
[ENA]
¡û
>WENV180457986
OBXV01000225
[OBXV] human gut metagenome; faeces
7296
7222
-
Arg
TCT
[ENA]
¡û
>WENV180482391
OBZG01000477
[OBZG] human gut metagenome; faeces
10027
9952
-
Arg
TCT
[ENA]
¡û
>WENV181834336
OGUR01000098
[OGUR] metagenome; Human gut stool
37272
37197
-
Arg
TCT
[ENA]
¡û
>WENV182889535
OKSF01000572
[OKSF] human gut metagenome; faeces
24183
24258
+
Arg
TCT
[ENA]
¡û
>WENV182907911
OKTF01002063
[OKTF] human gut metagenome; feces
5437
5512
+
Arg
TCT
[ENA]
¡û
>WENV183769972
PPYE01432501
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1589
1514
-
Arg
TCT
[ENA]
¡û
>WENV183777158
PPYF01102435
[PPYF] human gut metagenome; stool from patient with Crohn's disease
46724
46799
+
Arg
TCT
[ENA]
¡û
>WENV183778238
PPYF01116302
[PPYF] human gut metagenome; stool from patient with Crohn's disease
7692
7617
-
Arg
TCT
[ENA]
¡û
>WENV183784138
PPYF01246296
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3842
3917
+
Arg
TCT
[ENA]
¡û
>C181064415
CP022413
Bacillota
Blautia hansenii DSM 20583 [CP022413]
378908
378983
+
Arg
TCT
-
¡û
>C181191273
CP030280
Bacillota
Blautia argi KCTC 15426 [CP030280]
2840009
2839934
-
Arg
TCT
-
¡û
>W09113636
ABYU02000011
Bacillota
Blautia hansenii DSM 20583 [ABYU]
61933
61858
-
Arg
TCT
[ENA]
¡û
>W1910237433
FPLC01000010
Bacillota
Blautia sp. Marseille-P3201T [FPLC]
52003
52078
+
Arg
TCT
[ENA]
¡û
>W1911742796
QVHE01000004
Bacillota
Lachnospiraceae bacterium AM25-40 [QVHE]
158193
158118
-
Arg
TCT
[ENA]
¡û
>W1911742834
QVHF01000004
Bacillota
Lachnospiraceae bacterium AM25-39 [QVHF]
56409
56484
+
Arg
TCT
[ENA]
¡û
>W1810906764
QVGF01000004
Bacillota
Lachnospiraceae bacterium AM25-22 [QVGF]
158193
158118
-
Arg
TCT
[ENA]
¡û
>W1810906906
QVGI01000004
Bacillota
Lachnospiraceae bacterium AM25-11LB [QVGI]
162162
162087
-
Arg
TCT
[ENA]
¡û
>W2010249420
CABIXN020000003
Bacillota
Lachnospiraceae bacterium [CABIXN]
35674
35749
+
Arg
TCT
[ENA]
¡û
>W2010249433
CABIXN020000004
Bacillota
Lachnospiraceae bacterium [CABIXN]
361266
361191
-
Arg
TCT
[ENA]
¡û
>W2010253997
CABJAN020000027
Bacillota
Firmicutes bacterium [CABJAN]
35312
35238
-
Arg
TCT
[ENA]
¡û
>W2010386642
FPLC01000010
Bacillota
Blautia sp. Marseille-P3201T [FPLC]
52003
52078
+
Arg
TCT
[ENA]
¡û
>W2010485658
JAAITA010000003
Bacillota
Blautia hansenii MSK.15.26 [JAAITA]
189808
189883
+
Arg
TCT
[ENA]
¡û
>W2010576896
JAAWUJ010000008
Bacillota
Blautia producta MSK.4.17 [JAAWUJ]
105515
105441
-
Arg
TCT
[ENA]
¡û
>W2010576955
JAAWUK010000009
Bacillota
Blautia producta MSK.4.13 [JAAWUK]
5460
5534
+
Arg
TCT
[ENA]
¡û
>W2010577072
JAAWUM010000008
Bacillota
Blautia producta MSK.4.14 [JAAWUM]
105515
105441
-
Arg
TCT
[ENA]
¡û
>W2011307468
QVHE01000004
Bacillota
Lachnospiraceae bacterium AM25-40 [QVHE]
158193
158118
-
Arg
TCT
[ENA]
¡û
>W2011307506
QVHF01000004
Bacillota
Lachnospiraceae bacterium AM25-39 [QVHF]
56409
56484
+
Arg
TCT
[ENA]
¡û
>W2110075536
CACRSY010000007
Bacillota
Blautia hansenii [CACRSY]
130024
130099
+
Arg
TCT
[ENA]
¡û
>W2110101262
CAJFMH010000100
Bacillota
Blautia sp. An81 [CAJFMH]
193
119
-
Arg
TCT
[ENA]
¡û
>W2110126773
CAJTFD010000013
Bacillota
Clostridia bacterium [CAJTFD]
93684
93759
+
Arg
TCT
[ENA]
¡û
>C201308492
LR698970
Bacillota
Lachnospiraceae bacterium [LR698970, LR699005]
379599
379674
+
Arg
TCT
-
¡û
>W2110720895
JAJBOG010000003
Bacillota
Blautia hansenii MSK.15.43 [JAJBOG]
55802
55727
-
Arg
TCT
[ENA]
¡û
>C211423248
LR994468
Bacillota
Blautia argi [LR994468]
512576
512651
+
Arg
TCT
-
¡û
>C231449367
CP102264
Bacillota
Blautia hansenii DSM 20583 [CP102264]
378909
378984
+
Arg
TCT
-
¡û
>W11105890
ACTV01000022
Bacillota
Lachnospiraceae bacterium 6_1_63FAA [ACTV]
65361
65286
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK