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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.323375 (31 seq.)
>W1711021423
LQZG01000001
Actinomycetota
Janibacter melonis [LQZG]
130059
129984
-
Lys
TTT
[ENA]
¡û
>WENV180033999
FTKM01046334
[FTKM] metagenome; soil
271
345
+
Lys
TTT
[ENA]
¡û
>WENV180394169
OBPR01085335
[OBPR] marine metagenome; ENVO:00002042
201
128
-
Lys
TTT
[ENA]
¡û
>WENV180394503
OBPS01011259
[OBPS] marine metagenome; ENVO:00002010 seawater
760
687
-
Lys
TTT
[ENA]
¡û
>WENV180395597
OBPT01051732
[OBPT] marine metagenome; ENVO:00002010 seawater
168
241
+
Lys
TTT
[ENA]
¡û
>WENV180590928
OCOU01038368
[OCOU] marine metagenome; Water
58
131
+
Lys
TTT
[ENA]
¡û
>WENV170570737
FLOH01000020
[FLOH] marine metagenome; water
445240
445315
+
Lys
TTT
[ENA]
¡û
>WENV170617280
FUWD012920388
[FUWD] metagenome; unknown
248
175
-
Lys
TTT
[ENA]
¡û
>WENV170627523
FUWD013233015
[FUWD] metagenome; unknown
1334
1259
-
Lys
TTT
[ENA]
¡û
>C191130618
CP034766
Actinomycetota
Rhodococcus sp. X156 [CP034766]
3175024
3175099
+
Lys
TTT
-
¡û
>W2011430554
RIBU01000012
Actinomycetota
Janibacter melonis M714 [RIBU]
87518
87444
-
Lys
TTT
[ENA]
¡û
>SRA1053061
SRR035098.327763
454 Sequencing (SRP001819)
133
60
-
Lys
TTT
[SRA]
>W2110104090
CAJFZZ010000004
Actinomycetota
Janibacter melonis Marseille-P690 [CAJFZZ]
38578
38504
-
Lys
TTT
[ENA]
¡û
>W2110105482
CAJGVC010000001
Actinomycetota
Janibacter melonis Marseille-P2733 [CAJGVC]
3020483
3020409
-
Lys
TTT
[ENA]
¡û
>W2110105557
CAJGVE010000002
Actinomycetota
Janibacter melonis Marseille-P690 [CAJGVE]
147974
148048
+
Lys
TTT
[ENA]
¡û
>W2110297622
JADAKY010000001
Actinomycetota
Janibacter melonis M714 [JADAKY]
2121365
2121291
-
Lys
TTT
[ENA]
¡û
>W2110297656
JADAKZ010000001
Actinomycetota
Janibacter melonis M714 [JADAKZ]
2995050
2995124
+
Lys
TTT
[ENA]
¡û
>W2110297691
JADALA010000002
Actinomycetota
Janibacter melonis M714 [JADALA]
1346153
1346227
+
Lys
TTT
[ENA]
¡û
>W2110297763
JADALB010000001
Actinomycetota
Janibacter melonis M714 [JADALB]
2080354
2080280
-
Lys
TTT
[ENA]
¡û
>W2110297824
JADALC010000004
Actinomycetota
Janibacter melonis M714 [JADALC]
21441
21515
+
Lys
TTT
[ENA]
¡û
>W2110297840
JADALD010000001
Actinomycetota
Janibacter melonis M714 [JADALD]
1625431
1625505
+
Lys
TTT
[ENA]
¡û
>W2110297889
JADALE010000001
Actinomycetota
Janibacter melonis M714 [JADALE]
2641117
2641191
+
Lys
TTT
[ENA]
¡û
>W2110297926
JADALF010000001
Actinomycetota
Janibacter melonis M714 [JADALF]
1353232
1353306
+
Lys
TTT
[ENA]
¡û
>W2110297989
JADALG010000001
Actinomycetota
Janibacter melonis M714 [JADALG]
2636590
2636516
-
Lys
TTT
[ENA]
¡û
>C211296916
CP071868
Actinomycetota
Micrococcales bacterium LRZ-2 [CP071868]
256223
256149
-
Lys
TTT
-
¡û
>W2110724394
JAJBZM010000002
Actinomycetota
Janibacter melonis NBRC107855 [JAJBZM]
469329
469403
+
Lys
TTT
[ENA]
¡û
>W2110761319
QSNP01000016
Actinomycetota
Janibacter melonis 3a [QSNP]
15592
15666
+
Lys
TTT
[ENA]
¡û
>C231534539
CP110615
Actinomycetota
Rhodococcus sp. 75 [CP110615]
284324
284249
-
Lys
TTT
-
¡û
>C241011921
AP027732
Actinomycetota
Frondihabitans sucicola NBRC 108728 [AP027732]
1345778
1345705
-
Lys
TTT
-
¡û
>C241090414
CP044548
Actinomycetota
Janibacter melonis M714 [CP044548]
2121365
2121291
-
Lys
TTT
-
¡û
>W1610869711
LQZG01000001
Actinomycetota
Janibacter melonis [LQZG]
130059
129984
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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