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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.323979 (17 seq.)
>W1711129828
LUUJ01000101
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
68796
68720
-
Met
CAT
[ENA]
¡û
>W1711129873
LUUK01000173
Gammaproteobacteria
Methylomonas koyamae [LUUK]
32984
33060
+
Met
CAT
[ENA]
¡û
>W1711129910
LUUL01000069
Gammaproteobacteria
Methylomonas koyamae [LUUL]
30562
30638
+
Met
CAT
[ENA]
¡û
>W1711494830
MKMC01000004
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
46456
46532
+
Met
CAT
[ENA]
¡û
>WENV170660733
JXWU01021144
[JXWU] soil metagenome; rice field; organic control Plot
369
293
-
Met
CAT
[ENA]
¡û
>WENV170661776
JXWV01114930
[JXWV] soil metagenome; rice field; organic FYM Plot
324
248
-
Met
CAT
[ENA]
¡û
>C181088665
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
2318636
2318712
+
Met
CAT
-
¡û
>W2010570496
JAATWI010000056
Gammaproteobacteria
Methylococcaceae bacterium WWC4 [JAATWI]
77724
77648
-
Met
CAT
[ENA]
¡û
>W2011209153
PPPU01000011
Gammaproteobacteria
Methylomonas koyamae SM2 [PPPU]
10077
10001
-
Met
CAT
[ENA]
¡û
>C211001800
AP019777
Gammaproteobacteria
Methylomonas koyamae Fw12E-Y [AP019777]
2307529
2307605
+
Met
CAT
-
¡û
>C231577283
CP116398
Gammaproteobacteria
Methylomonas sp. EFPC3 [CP116398]
1275083
1275007
-
Met
CAT
-
¡û
>C241250639
CP123897
Gammaproteobacteria
Methylomonas sp. UP202 [CP123897]
1522935
1523011
+
Met
CAT
-
¡û
>C241314704
CP133985
Gammaproteobacteria
Methylomonas koyamae MY1 [CP133985]
2185983
2186059
+
Met
CAT
-
¡û
>C161072115
CP014360
Gammaproteobacteria
Methylomonas sp. DH-1 [CP014360]
2205977
2206053
+
Met
CAT
[Ensembl]
¡û
>W1610940901
LUUJ01000101
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
68796
68720
-
Met
CAT
[ENA]
¡û
>W1610940946
LUUK01000173
Gammaproteobacteria
Methylomonas koyamae [LUUK]
32984
33060
+
Met
CAT
[ENA]
¡û
>W1610940983
LUUL01000069
Gammaproteobacteria
Methylomonas koyamae [LUUL]
30562
30638
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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