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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.323997 (9 seq.)
>WENV170004623
AGTN01739927
[AGTN] bioreactor metagenome; poplar biomass
315
239
-
Arg
TCT
[ENA]
¡û
>WENV170712250
LNFM01011323
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2026
2102
+
Arg
TCT
[ENA]
¡û
>WENV170712470
LNFM01013743
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
8185
8109
-
Arg
TCT
[ENA]
¡û
>W2010473660
JAAIKB010000001
Alphaproteobacteria
Roseomonas sp. PeD5 [JAAIKB]
83601
83676
+
Arg
TCT
[ENA]
¡û
>W2010567964
JAATJR010000006
Alphaproteobacteria
Roseomonas frigidaquae JCM [JAATJR]
108614
108538
-
Arg
TCT
[ENA]
¡û
>W2010573829
JAAVNE010000005
Alphaproteobacteria
Roseomonas sp. BU-1 [JAAVNE]
147659
147735
+
Arg
TCT
[ENA]
¡û
>W2010575255
JAAVTX010000006
Alphaproteobacteria
Roseomonas frigidaquae JCM 15073 [JAAVTX]
108614
108538
-
Arg
TCT
[ENA]
¡û
>W2110445355
JAERQN010000009
Alphaproteobacteria
Roseomonas ponticola SYSU M41301 [JAERQN]
89693
89768
+
Arg
TCT
[ENA]
¡û
>W2110518463
JAFNJS010000002
Alphaproteobacteria
Roseomonas tokyonensis K-20 [JAFNJS]
841891
841967
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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