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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.324282 (61 seq.)
>W1711738212
MUBA01000038
Actinomycetota
Streptomyces bobili [MUBA]
3661
3735
+
Thr
CGT
[ENA]
¡û
>WENV180023378
FTHV01003181
[FTHV] metagenome; soil
112
38
-
Thr
CGT
[ENA]
¡û
>WENV180023507
FTHY01003502
[FTHY] metagenome; soil
112
38
-
Thr
CGT
[ENA]
¡û
>WENV180024780
FTIJ01012624
[FTIJ] metagenome; soil
2689
2763
+
Thr
CGT
[ENA]
¡û
>WENV180033604
FTKL01000399
[FTKL] metagenome; soil
326
252
-
Thr
CGT
[ENA]
¡û
>WENV180033647
FTKL01001036
[FTKL] metagenome; soil
145
219
+
Thr
CGT
[ENA]
¡û
>W141214321
AZSS01000018
Actinomycetota
Streptomyces exfoliatus DSM 41693 [AZSS]
57795
57721
-
Thr
CGT
[ENA]
¡û
>WENV170565621
FJVZ01001231
[FJVZ] metagenome; soil
1485
1411
-
Thr
CGT
[ENA]
¡û
>WENV170565630
FJVZ01001475
[FJVZ] metagenome; soil
2521
2595
+
Thr
CGT
[ENA]
¡û
>C181130289
CP026304
Actinomycetota
Streptomyces lunaelactis MM109 [CP026304]
4797440
4797514
+
Thr
CGT
-
¡û
>W141759830
JNZP01000028
Actinomycetota
Streptomyces exfoliatus [JNZP]
21426
21352
-
Thr
CGT
[ENA]
¡û
>W141762474
JOBK01004767
Actinomycetota
Streptomyces sp. NRRL S-20 [JOBK]
2415
2489
+
Thr
CGT
[ENA]
¡û
>W141768199
JOFB01000024
Actinomycetota
Streptomyces exfoliatus [JOFB]
57590
57664
+
Thr
CGT
[ENA]
¡û
>W1910182012
BJMN01000028
Actinomycetota
Streptomyces gardneri NBRC 12865 [BJMN]
124186
124260
+
Thr
CGT
[ENA]
¡û
>W2010095661
BJMN01000028
Actinomycetota
Streptomyces gardneri NBRC 12865 [BJMN]
124186
124260
+
Thr
CGT
[ENA]
¡û
>W2010465841
JAAGLT010000037
Actinomycetota
Streptomyces sp. SID12488 [JAAGLT]
49970
49895
-
Thr
CGT
[ENA]
¡û
>W2010465855
JAAGLU010000003
Actinomycetota
Streptomyces sp. SID12501 [JAAGLU]
36932
36857
-
Thr
CGT
[ENA]
¡û
>W2010614059
JABSUC010000261
Actinomycetota
Streptomyces lunaelactis MM15 [JABSUC]
4166
4240
+
Thr
CGT
[ENA]
¡û
>W2010614096
JABSUD010000080
Actinomycetota
Streptomyces lunaelactis MM22 [JABSUD]
4047
4121
+
Thr
CGT
[ENA]
¡û
>W2010614157
JABSUE010000075
Actinomycetota
Streptomyces lunaelactis MM25 [JABSUE]
27078
27004
-
Thr
CGT
[ENA]
¡û
>W2010614205
JABSUF010000034
Actinomycetota
Streptomyces lunaelactis MM28 [JABSUF]
26619
26545
-
Thr
CGT
[ENA]
¡û
>W2010614281
JABSUG010000045
Actinomycetota
Streptomyces lunaelactis MM29 [JABSUG]
4064
4138
+
Thr
CGT
[ENA]
¡û
>W2010614330
JABSUH010000029
Actinomycetota
Streptomyces lunaelactis MM31 [JABSUH]
24827
24901
+
Thr
CGT
[ENA]
¡û
>W2010614444
JABSUI010000322
Actinomycetota
Streptomyces lunaelactis MM37 [JABSUI]
3944
4018
+
Thr
CGT
[ENA]
¡û
>W2010614449
JABSUJ010000002
Actinomycetota
Streptomyces lunaelactis MM40 [JABSUJ]
70818
70892
+
Thr
CGT
[ENA]
¡û
>W2010614538
JABSUK010000077
Actinomycetota
Streptomyces lunaelactis MM51 [JABSUK]
4065
4139
+
Thr
CGT
[ENA]
¡û
>W2010614616
JABSUL010000097
Actinomycetota
Streptomyces lunaelactis MM78 [JABSUL]
21511
21437
-
Thr
CGT
[ENA]
¡û
>W2010614664
JABSUM010000074
Actinomycetota
Streptomyces lunaelactis MM83 [JABSUM]
4059
4133
+
Thr
CGT
[ENA]
¡û
>W2010614732
JABSUN010000074
Actinomycetota
Streptomyces lunaelactis MM91 [JABSUN]
4064
4138
+
Thr
CGT
[ENA]
¡û
>W2010614830
JABSUO010000344
Actinomycetota
Streptomyces lunaelactis MM103 [JABSUO]
1786
1712
-
Thr
CGT
[ENA]
¡û
>W2010614847
JABSUP010000019
Actinomycetota
Streptomyces lunaelactis MM113 [JABSUP]
34603
34677
+
Thr
CGT
[ENA]
¡û
>W2010614896
JABSUQ010000003
Actinomycetota
Streptomyces lunaelactis MM115 [JABSUQ]
115822
115748
-
Thr
CGT
[ENA]
¡û
>W2010614961
JABSUR010000001
Actinomycetota
Streptomyces lunaelactis MM126 [JABSUR]
113205
113279
+
Thr
CGT
[ENA]
¡û
>W2010615079
JABSUS010000010
Actinomycetota
Streptomyces lunaelactis MMun143 [JABSUS]
92787
92713
-
Thr
CGT
[ENA]
¡û
>W2011472347
RPSA01000004
Actinomycetota
Streptomyces sp. WAC01280 [RPSA]
624874
624948
+
Thr
CGT
[ENA]
¡û
>W2110039548
BMSF01000007
Actinomycetota
Streptomyces narbonensis JCM 4147 [BMSF]
122282
122208
-
Thr
CGT
[ENA]
¡û
>W2110045282
BMVS01000009
Actinomycetota
Streptomyces galilaeus JCM 4757 [BMVS]
131931
131857
-
Thr
CGT
[ENA]
¡û
>W2110052764
BNBG01000012
Actinomycetota
Streptomyces gardneri JCM 4375 [BNBG]
162627
162701
+
Thr
CGT
[ENA]
¡û
>W2110542402
JAGGOT010000010
Actinomycetota
Streptomyces sp. ISL-43 [JAGGOT]
135161
135087
-
Thr
CGT
[ENA]
¡û
>W2110542507
JAGGOU010000132
Actinomycetota
Streptomyces sp. ISL-44 [JAGGOU]
10072
9998
-
Thr
CGT
[ENA]
¡û
>W2110542580
JAGGOW010000006
Actinomycetota
Streptomyces sp. ISL-66 [JAGGOW]
3952
4026
+
Thr
CGT
[ENA]
¡û
>C211013018
AP023440
Actinomycetota
Streptomyces glomeroaurantiacus JCM 4677 [AP023440]
5263057
5263131
+
Thr
CGT
-
¡û
>C211126903
CP059991
Actinomycetota
Streptomyces gardneri ATCC 15439 [CP059991]
4128006
4127932
-
Thr
CGT
-
¡û
>C231617701
CP119145
Actinomycetota
Streptomyces sp. AM 4-1-1 [CP119145]
4240460
4240534
+
Thr
CGT
-
¡û
>C241026670
CP023703
Actinomycetota
Streptomyces galilaeus ATCC 14969 [CP023703]
4407164
4407238
+
Thr
CGT
-
¡û
>C241032475
CP029194
Actinomycetota
Streptomyces venezuelae ATCC 15068 [CP029194]
4725655
4725729
+
Thr
CGT
-
¡û
>C241201108
CP107855
Actinomycetota
Streptomyces sp. NBC_00503 [CP107855]
4470420
4470494
+
Thr
CGT
-
¡û
>C241203306
CP107924
Actinomycetota
Streptomyces sp. NBC_00435 [CP107924]
4646010
4646084
+
Thr
CGT
-
¡û
>C241203770
CP107935
Actinomycetota
Streptomyces sp. NBC_00414 [CP107935]
5710947
5711021
+
Thr
CGT
-
¡û
>C241203930
CP107938
Actinomycetota
Actinomycetospora sp. NBC_00405 [CP107938]
3717681
3717606
-
Thr
CGT
-
¡û
>C241206315
CP108006
Actinomycetota
Streptomyces sp. NBC_00335 [CP108006]
3810129
3810055
-
Thr
CGT
-
¡û
>C241208792
CP108414
Actinomycetota
Streptomyces sp. NBC_01298 [CP108414]
4211431
4211357
-
Thr
CGT
-
¡û
>C241210043
CP108474
Actinomycetota
Streptomyces sp. NBC_01255 [CP108474]
4729731
4729805
+
Thr
CGT
-
¡û
>C241210387
CP108488
Actinomycetota
Streptomyces sp. NBC_01244 [CP108488]
5368835
5368909
+
Thr
CGT
-
¡û
>C241211008
CP108524
Actinomycetota
Streptomyces zaomyceticus NBC_01228 [CP108524]
4384486
4384412
-
Thr
CGT
-
¡û
>C241213890
CP109055
Actinomycetota
Streptomyces sp. NBC_01304 [CP109055]
5194294
5194220
-
Thr
CGT
-
¡û
>C241296200
CP130720
Actinomycetota
Streptomyces sp. NBC_01296 [CP130720]
4103655
4103581
-
Thr
CGT
-
¡û
>C161051690
CP013129
Actinomycetota
Streptomyces venezuelae ATCC 15439 [CP013129]
4128014
4127940
-
Thr
CGT
-
¡û
>C161107202
LN881739
Actinomycetota
Streptomyces venezuelae ATCC 15439 [LN881739]
4935440
4935514
+
Thr
CGT
-
¡û
>W1610632075
LIPP01000018
Actinomycetota
Streptomyces aurantiacus [LIPP]
9128
9054
-
Thr
CGT
[ENA]
¡û
>W1710766461
LIPP01000018
Actinomycetota
Streptomyces aurantiacus [LIPP]
9128
9054
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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