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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.324950 (42 seq.)
>W1712038844
NFJF01000009
Actinomycetota
Olsenella sp. An270 [NFJF]
49098
49023
-
Ala
TGC
[ENA]
¡û
>WENV180412256
OBVA01000431
[OBVA] human gut metagenome; faeces
3663
3588
-
Ala
TGC
[ENA]
¡û
>WENV180483513
OBZH01000965
[OBZH] human gut metagenome; faeces
799
874
+
Ala
TGC
[ENA]
¡û
>WENV180656582
OCVV010576644
[OCVV] gut metagenome; gut
148
223
+
Ala
TGC
[ENA]
¡û
>WENV180656584
OCVV010576644
[OCVV] gut metagenome; gut
148
223
+
Ala
TGC
[ENA]
¡û
>WENV180676197
OCVV011361720
[OCVV] gut metagenome; gut
66636
66561
-
Ala
TGC
[ENA]
¡û
>WENV180676206
OCVV011361720
[OCVV] gut metagenome; gut
66636
66561
-
Ala
TGC
[ENA]
¡û
>WENV181238717
OFFC01002237
[OFFC] mouse gut metagenome; faeces
7286
7211
-
Ala
TGC
[ENA]
¡û
>WENV181248722
OFFM01000008
[OFFM] mouse gut metagenome; faeces
106753
106828
+
Ala
TGC
[ENA]
¡û
>WENV181258209
OFFV01000005
[OFFV] mouse gut metagenome; faeces
114809
114734
-
Ala
TGC
[ENA]
¡û
>WENV181266752
OFGC01000164
[OFGC] mouse gut metagenome; faeces
67220
67295
+
Ala
TGC
[ENA]
¡û
>WENV181267766
OFGD01000025
[OFGD] mouse gut metagenome; faeces
67442
67517
+
Ala
TGC
[ENA]
¡û
>WENV181274202
OFGI01000012
[OFGI] mouse gut metagenome; faeces
145644
145719
+
Ala
TGC
[ENA]
¡û
>WENV181299938
OFHN01000004
[OFHN] mouse gut metagenome; faeces
159221
159146
-
Ala
TGC
[ENA]
¡û
>WENV181723249
OGPW01002849
[OGPW] human gut metagenome; faeces
8151
8076
-
Ala
TGC
[ENA]
¡û
>WENV181911330
OGYD01001013
[OGYD] human gut metagenome; faeces
22544
22469
-
Ala
TGC
[ENA]
¡û
>WENV182389994
OIED01012919
[OIED] human gut metagenome; feces
93
168
+
Ala
TGC
[ENA]
¡û
>W141284941
JANC01000012
Actinomycetota
Olsenella uli MSTE5 [JANC]
179618
179693
+
Ala
TGC
[ENA]
¡û
>WENV183096772
OLNE01000229
[OLNE] human gut metagenome; faeces
9127
9052
-
Ala
TGC
[ENA]
¡û
>WENV183108495
OLNN01000209
[OLNN] human gut metagenome; faeces
26518
26443
-
Ala
TGC
[ENA]
¡û
>WENV183128273
OLNZ01004227
[OLNZ] human gut metagenome; faeces
6557
6482
-
Ala
TGC
[ENA]
¡û
>WENV183249629
OLRG01006406
[OLRG] human gut metagenome; faeces
877
952
+
Ala
TGC
[ENA]
¡û
>WENV183478797
OMFD01050467
[OMFD] human gut metagenome; feces
335
410
+
Ala
TGC
[ENA]
¡û
>WENV183551751
OOBJ01000051
[OOBJ] human gut metagenome; human gut
51139
51214
+
Ala
TGC
[ENA]
¡û
>WENV183723145
PDYJ01000765
[PDYJ] gut metagenome; fecal pellets
289142
289217
+
Ala
TGC
[ENA]
¡û
>WENV170540308
CWGY01000046
[CWGY] human gut metagenome; ENVO:feces
65436
65511
+
Ala
TGC
[ENA]
¡û
>C191007291
AP019367
Actinomycetota
Parolsenella catena JCM 31932 [AP019367]
10610
10685
+
Ala
TGC
-
¡û
>W2010160437
CAAKON010000041
Actinomycetota
Olsenella uli [CAAKON]
65436
65511
+
Ala
TGC
[ENA]
¡û
>W2010334904
CACYGA010000071
Actinomycetota
Olsenella umbonata [CACYGA]
14468
14393
-
Ala
TGC
[ENA]
¡û
>W2010585489
JABAHI010000008
Actinomycetota
Olsenella sp. KGMB02461 [JABAHI]
1393452
1393527
+
Ala
TGC
[ENA]
¡û
>W2011686319
SRYE01000001
Actinomycetota
Coriobacteriaceae bacterium NM07_P-09 [SRYE]
220805
220730
-
Ala
TGC
[ENA]
¡û
>W2110221938
JACJJK010000004
Actinomycetota
Olsenella uli An820 [JACJJK]
64564
64638
+
Ala
TGC
[ENA]
¡û
>W2110258449
JACSNQ010000003
Actinomycetota
Olsenella profusa An794 [JACSNQ]
104857
104932
+
Ala
TGC
[ENA]
¡û
>W2110302735
JADCJZ010000001
Actinomycetota
Olsenella gallinarum DSM 107455 [JADCJZ]
36649
36574
-
Ala
TGC
[ENA]
¡û
>C201309684
LR698995
Actinomycetota
Atopobiaceae bacterium [LR698995]
1984006
1983931
-
Ala
TGC
-
¡û
>C211022730
AP024608
Actinomycetota
Atopobiaceae bacterium P1 [AP024608]
10709
10784
+
Ala
TGC
-
¡û
>C231011526
AP025285
Actinomycetota
Leptogranulimonas caecicola TOC12 [AP025285]
10709
10784
+
Ala
TGC
-
¡û
>C10109975
CP002106
Actinomycetota
Olsenella uli DSM 7084 [CP002106]
2036679
2036604
-
Ala
TGC
[Ensembl]
¡û
>W1610530086
JQCO01000002
Actinomycetota
Olsenella uli DSM 7084 [JQCO]
293033
292958
-
Ala
TGC
[ENA]
¡û
>WENV078657
AAQK01005393
Gut microbiome of Human (healthy human stool sample 7)
350
275
-
Ala
TGC
[ENA]
>W1710512501
FMZL01000017
Actinomycetota
Parafannyhessea umbonata [FMZL]
15076
15151
+
Ala
TGC
[ENA]
¡û
>W1710552097
FOGP01000004
Actinomycetota
Parafannyhessea umbonata [FOGP]
108460
108535
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK