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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.326062 (22 seq.)
>C171110783
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
1166082
1166007
-
Ala
TGC
-
¡û
>C171110789
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
581786
581711
-
Ala
TGC
-
¡û
>WENV183810975
PVBE011534015
[PVBE] marine metagenome; water
524
599
+
Ala
TGC
[ENA]
¡û
>WENV170242703
CEQO01077163
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
741
666
-
Ala
TGC
[ENA]
¡û
>WENV170359080
CETK01165624
[CETK] marine metagenome genome assembly TARA_111_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5
80
+
Ala
TGC
[ENA]
¡û
>WENV170452453
CEUZ01264213
[CEUZ] marine metagenome genome assembly TARA_125_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
547
472
-
Ala
TGC
[ENA]
¡û
>C181081645
CP023454
Alphaproteobacteria
Rhodobacteraceae bacterium QY30 [CP023454]
1159778
1159853
+
Ala
TGC
-
¡û
>C181081664
CP023454
Alphaproteobacteria
Rhodobacteraceae bacterium QY30 [CP023454]
3294000
3293925
-
Ala
TGC
-
¡û
>W1911245348
NSJZ01000042
Alphaproteobacteria
Paracoccus sp. WN007 [NSJZ]
3435
3360
-
Ala
TGC
[ENA]
¡û
>W1810697141
QLUV01000031
Alphaproteobacteria
Paracoccus endophyticus SYSUP0003 [QLUV]
2258
2333
+
Ala
TGC
[ENA]
¡û
>W2010738968
JACJFV010000008
Alphaproteobacteria
Paracoccus sp. MC1862 [JACJFV]
3695
3620
-
Ala
TGC
[ENA]
¡û
>W2011070249
NSJZ01000042
Alphaproteobacteria
Paracoccus sp. WN007 [NSJZ]
3435
3360
-
Ala
TGC
[ENA]
¡û
>W2012065478
VJYZ01000013
Alphaproteobacteria
Paracoccus marinus NBRC 1000637 [VJYZ]
3776
3701
-
Ala
TGC
[ENA]
¡û
>W2110639362
JAHQZU010000055
Alphaproteobacteria
Paracoccus sp. Z118 [JAHQZU]
2225
2300
+
Ala
TGC
[ENA]
¡û
>C211236509
CP067225
Alphaproteobacteria
Paracoccus sp. MC1862 [CP067225]
2607687
2607612
-
Ala
TGC
-
¡û
>C211236512
CP067225
Alphaproteobacteria
Paracoccus sp. MC1862 [CP067225]
2280249
2280174
-
Ala
TGC
-
¡û
>C241151061
CP051542
Alphaproteobacteria
Paracoccus sanguinis OM2164 [CP051542]
1576592
1576517
-
Ala
TGC
-
¡û
>C241151064
CP051542
Alphaproteobacteria
Paracoccus sanguinis OM2164 [CP051542]
1431857
1431782
-
Ala
TGC
-
¡û
>W1511348713
JRKQ01000154
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
3613
3538
-
Ala
TGC
[ENA]
¡û
>W1511348806
JRKS01000111
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
3623
3548
-
Ala
TGC
[ENA]
¡û
>W1511348851
JRKT01000118
Alphaproteobacteria
Paracoccus sanguinis 4681 [JRKT]
2197
2272
+
Ala
TGC
[ENA]
¡û
>W1710592396
FRCK01000021
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
3653
3578
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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