This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.326194 (37 seq.)
>W1711317452
MAXH01000078
Thermodesulfobacteriota
Desulfobulbaceae bacterium S3730MH12 [MAXH]
10146
10071
-
Val
TAC
[ENA]
¡û
>W1711411630
MGTI01000119
Thermodesulfobacteriota
Desulfobacterales bacterium GWB2_56_26 [MGTI]
9151
9226
+
Val
TAC
[ENA]
¡û
>C007893
CR522870
Thermodesulfobacteriota
Desulfotalea psychrophila LSv54 [CR522870]
2889552
2889477
-
Val
TAC
[Ensembl]
¡û
>C007895
CR522870
Thermodesulfobacteriota
Desulfotalea psychrophila LSv54 [CR522870]
2889322
2889247
-
Val
TAC
[Ensembl]
¡û
>C007897
CR522870
Thermodesulfobacteriota
Desulfotalea psychrophila LSv54 [CR522870]
2889095
2889020
-
Val
TAC
[Ensembl]
¡û
>C007899
CR522870
Thermodesulfobacteriota
Desulfotalea psychrophila LSv54 [CR522870]
2888869
2888794
-
Val
TAC
[Ensembl]
¡û
>C007901
CR522870
Thermodesulfobacteriota
Desulfotalea psychrophila LSv54 [CR522870]
2888642
2888567
-
Val
TAC
[Ensembl]
¡û
>C007903
CR522870
Thermodesulfobacteriota
Desulfotalea psychrophila LSv54 [CR522870]
2888414
2888339
-
Val
TAC
[Ensembl]
¡û
>WENV180296828
OBJA01003316
[OBJA] soil metagenome; sediment, water from around vicinity
1182
1107
-
Val
TAC
[ENA]
¡û
>WENV180296830
OBJA01003316
[OBJA] soil metagenome; sediment, water from around vicinity
923
848
-
Val
CAC
[ENA]
¡û
>WENV183704287
PDWI01000134
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
85520
85595
+
Val
TAC
[ENA]
¡û
>WENV183704289
PDWI01000134
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
85829
85904
+
Val
TAC
[ENA]
¡û
>WENV183705733
PDWI01002174
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
15184
15109
-
Val
TAC
[ENA]
¡û
>WENV183706916
PDWI01005959
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
22989
23064
+
Val
TAC
[ENA]
¡û
>WENV183708564
PDWI01017428
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
24
99
+
Val
TAC
[ENA]
¡û
>WENV183708827
PDWI01020241
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
216
141
-
Val
TAC
[ENA]
¡û
>WENV183716457
PDWJ01000011
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
299212
299287
+
Val
TAC
[ENA]
¡û
>WENV183716459
PDWJ01000011
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
299521
299596
+
Val
TAC
[ENA]
¡û
>WENV183717685
PDWJ01001405
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
20287
20212
-
Val
TAC
[ENA]
¡û
>WENV183720860
PDWJ01047642
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3793
3868
+
Val
TAC
[ENA]
¡û
>WENV183720862
PDWJ01047642
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3989
4064
+
Val
TAC
[ENA]
¡û
>WENV170006360
AMWB02017940
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
12599
12674
+
Val
TAC
[ENA]
¡û
>WENV170572198
FLOH01000600
[FLOH] marine metagenome; water
62868
62793
-
Val
TAC
[ENA]
¡û
>WENV170695476
LGVE01102654
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
409
334
-
Val
TAC
[ENA]
¡û
>WENV170696833
LGVF01053501
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
5228
5303
+
Val
TAC
[ENA]
¡û
>W2011702144
SWCL01000006
Thermodesulfobacteriota
Desulfopila sp. IMCC35005 [SWCL]
153067
153142
+
Val
TAC
[ENA]
¡û
>W2011702146
SWCL01000006
Thermodesulfobacteriota
Desulfopila sp. IMCC35005 [SWCL]
154018
154093
+
Val
TAC
[ENA]
¡û
>W2011702148
SWCL01000006
Thermodesulfobacteriota
Desulfopila sp. IMCC35005 [SWCL]
154604
154679
+
Val
TAC
[ENA]
¡û
>W2110494648
JAFFQC010000007
Thermodesulfobacteriota
Desulfobulbus alkaliphilus DSM 24258 [JAFFQC]
972
897
-
Val
TAC
[ENA]
¡û
>C211013555
AP024086
Thermodesulfobacteriota
Desulfobulbaceae bacterium KT2 [AP024086]
1862862
1862787
-
Val
TAC
-
¡û
>C211013557
AP024086
Thermodesulfobacteriota
Desulfobulbaceae bacterium KT2 [AP024086]
1862514
1862439
-
Val
TAC
-
¡û
>C241146452
CP050698
Thermodesulfobacteriota
Desulfosediminicola flagellatus IMCC35005 [CP050698]
3399136
3399061
-
Val
TAC
-
¡û
>C241146454
CP050698
Thermodesulfobacteriota
Desulfosediminicola flagellatus IMCC35005 [CP050698]
3398185
3398110
-
Val
TAC
-
¡û
>C241146456
CP050698
Thermodesulfobacteriota
Desulfosediminicola flagellatus IMCC35005 [CP050698]
3397599
3397524
-
Val
TAC
-
¡û
>W1511564419
LADS01000051
Thermodesulfobacteriota
Desulfobulbaceae bacterium BRH_c16a [LADS]
1528
1453
-
Val
TAC
[ENA]
¡û
>W1511564421
LADS01000051
Thermodesulfobacteriota
Desulfobulbaceae bacterium BRH_c16a [LADS]
1267
1192
-
Val
TAC
[ENA]
¡û
>W1511564423
LADS01000051
Thermodesulfobacteriota
Desulfobulbaceae bacterium BRH_c16a [LADS]
1006
931
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK