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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.326835 (41 seq.)
>W1710880306
LMSG01000004
Actinomycetota
Arthrobacter sp. Soil762 [LMSG]
68326
68400
+
Arg
ACG
[ENA]
¡û
>W1711724070
MTPV01000034
Actinomycetota
Arthrobacter sp. SRS-W-1-2016 [MTPV]
61024
61100
+
Arg
ACG
[ENA]
¡û
>WENV180016391
FSUT01000776
[FSUT] metagenome; soil
308
382
+
Arg
ACG
[ENA]
¡û
>W141065991
AQRI01000008
Actinomycetota
Arthrobacter sp. MA-N2 [AQRI]
136274
136198
-
Arg
ACG
[ENA]
¡û
>C181000336
AP014718
Actinomycetota
Arthrobacter sp. Hiyo4 [AP014718]
562888
562814
-
Arg
ACG
-
¡û
>C181033528
CP018863
Actinomycetota
Arthrobacter crystallopoietes DSM 20117 [CP018863]
2144758
2144682
-
Arg
ACG
-
¡û
>C191188307
CP041188
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502772 [CP041188]
1205679
1205605
-
Arg
ACG
-
¡û
>W1910182082
BJMO01000022
Actinomycetota
Sinomonas atrocyanea NBRC 12956 [BJMO]
9286
9210
-
Arg
ACG
[ENA]
¡û
>W1911532758
OIVI01000388
Actinomycetota
Arthrobacter alpinus [OIVI]
17129
17055
-
Arg
ACG
[ENA]
¡û
>W1810167952
PJIW01000021
Actinomycetota
Arthrobacter sp. 4R501 [PJIW]
21941
21867
-
Arg
ACG
[ENA]
¡û
>W1810707044
QMKP01000004
Actinomycetota
Arthrobacter sp. AQ5-06 [QMKP]
210578
210504
-
Arg
ACG
[ENA]
¡û
>W2010095731
BJMO01000022
Actinomycetota
Sinomonas atrocyanea NBRC 12956 [BJMO]
9286
9210
-
Arg
ACG
[ENA]
¡û
>W2010586969
JABBCH010000002
Actinomycetota
Arthrobacter sp. SF27 [JABBCH]
554714
554638
-
Arg
ACG
[ENA]
¡û
>W2010698312
JACHEE010000011
Actinomycetota
Arthrobacter sp. AZCC_0090 [JACHEE]
64165
64239
+
Arg
ACG
[ENA]
¡û
>W2011165445
OIVI01000388
Actinomycetota
Arthrobacter alpinus [OIVI]
17129
17055
-
Arg
ACG
[ENA]
¡û
>W2011431320
RJAE01000007
Actinomycetota
Arthrobacter sp. LAM7117 [RJAE]
62833
62909
+
Arg
ACG
[ENA]
¡û
>W2011695653
SUKC01000016
Actinomycetota
Arthrobacter sp. CAU 1506 [SUKC]
36729
36653
-
Arg
ACG
[ENA]
¡û
>W2011964292
VBRT01000002
Actinomycetota
Arthrobacter crystallopoietes PCD-1 [VBRT]
468273
468197
-
Arg
ACG
[ENA]
¡û
>W2110029464
BMKT01000106
Actinomycetota
Sinomonas atrocyanea CGMCC 1.1891 [BMKT]
8250
8174
-
Arg
ACG
[ENA]
¡û
>W2110054568
BNCM01000002
Actinomycetota
Sinomonas sp. KCTC 49339 [BNCM]
96575
96650
+
Arg
ACG
[ENA]
¡û
>W2110283827
JACXBW010000012
Actinomycetota
Pseudarthrobacter sulfonivorans ALL [JACXBW]
63429
63503
+
Arg
ACG
[ENA]
¡û
>W2110445642
JAERRC010000024
Actinomycetota
Sinomonas sp. JC656 [JAERRC]
96575
96650
+
Arg
ACG
[ENA]
¡û
>W2110543319
JAGGPL010000014
Actinomycetota
Arthrobacter sp. ISL-48 [JAGGPL]
21542
21468
-
Arg
ACG
[ENA]
¡û
>C211058803
CP043178
Actinomycetota
Pseudarthrobacter sp. NBSH8 [CP043178]
662485
662411
-
Arg
ACG
-
¡û
>C211299128
CP072014
Actinomycetota
Arthrobacter crystallopoietes NT16 [CP072014]
1452813
1452737
-
Arg
ACG
-
¡û
>C231004827
AP024525
Actinomycetota
Corynebacterium cyclohexanicum ATCC 51369 [AP024525]
724636
724561
-
Arg
ACG
-
¡û
>C231051392
CP044532
Actinomycetota
Arthrobacter sp. CDRTa11 [CP044532]
885898
885824
-
Arg
ACG
-
¡û
>C231193798
CP084560
Actinomycetota
Arthrobacter sp. FW306-2-2C-D06B [CP084560]
612729
612655
-
Arg
ACG
-
¡û
>C231331692
CP093326
Actinomycetota
Arthrobacter sulfonylureivorans S4-C24 [CP093326]
3527142
3527218
+
Arg
ACG
-
¡û
>C231374481
CP096882
Actinomycetota
Pseudarthrobacter sp. SSS035 [CP096882]
1127891
1127965
+
Arg
ACG
-
¡û
>W2110757861
PZKO01000018
Actinomycetota
Pseudarthrobacter sp. AB1 [PZKO]
34104
34178
+
Arg
ACG
[ENA]
¡û
>C231527697
CP110114
Actinomycetota
Arthrobacter sp. YA7-1 [CP110114]
587522
587448
-
Arg
ACG
-
¡û
>C231548414
CP113343
Actinomycetota
Arthrobacter sp. MMS18-M83 [CP113343]
2281942
2282016
+
Arg
ACG
-
¡û
>C241126538
CP047898
Actinomycetota
Pseudarthrobacter psychrotolerans YJ56 [CP047898]
4209527
4209453
-
Arg
ACG
-
¡û
>W2130044350
UZAA01000388
Actinomycetota
Arthrobacter alpinus [UZAA]
17129
17055
-
Arg
ACG
[ENA]
¡û
>W2310019748
BRVS01000019
Actinomycetota
Arthrobacter mangrovi NBRC 112813 [BRVS]
2241
2317
+
Arg
ACG
[ENA]
¡û
>W1511398241
JTDL01000109
Actinomycetota
Sinomonas humi MUSC 117 [JTDL]
2577
2651
+
Arg
ACG
[ENA]
¡û
>C161060721
CP013747
Actinomycetota
Pseudarthrobacter sulfonivorans Ar51 [CP013747]
1555971
1556045
+
Arg
ACG
[Ensembl]
¡û
>C161073249
CP014518
Actinomycetota
Sinomonas atrocyanea KCTC 3377 [CP014518]
658076
658000
-
Arg
ACG
[Ensembl]
¡û
>W1610742652
LMSG01000004
Actinomycetota
Arthrobacter sp. Soil762 [LMSG]
68326
68400
+
Arg
ACG
[ENA]
¡û
>W1710526390
FNKH01000002
Actinomycetota
Arthrobacter crystallopoietes [FNKH]
1346488
1346564
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK