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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.328305 (97 seq.)
>W1711046952
LROR01000099
Bacillota
Clostridium coskatii [LROR]
711
636
-
Met
CAT
[ENA]
¡û
>W1711046983
LROS01000021
Bacillota
Clostridium ragsdalei P11 [LROS]
602
527
-
Met
CAT
[ENA]
¡û
>W131252521
CBML010000006
Bacillota
Clostridium chauvoei JF4335 [CBML]
14071
13996
-
Met
CAT
[ENA]
¡û
>C171131183
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
315012
314937
-
Met
CAT
-
¡û
>WENV180455585
OBXO01012113
[OBXO] human gut metagenome; faeces
961
886
-
fMet
CAT
[ENA]
¡û
>WENV180456668
OBXR01001624
[OBXR] human gut metagenome; faeces
105
30
-
fMet
CAT
[ENA]
¡û
>WENV180605663
OCPT01000559
[OCPT] human gut metagenome; human gut
20005
19930
-
fMet
CAT
[ENA]
¡û
>WENV180748496
ODHN01233373
[ODHN] human metagenome; G_DNA_Stool
175
100
-
fMet
CAT
[ENA]
¡û
>WENV181467722
OGER01032512
[OGER] metagenome; Human gut stool
730
805
+
fMet
CAT
[ENA]
¡û
>WENV181556386
OGIU01019994
[OGIU] metagenome; Human gut stool
908
833
-
fMet
CAT
[ENA]
¡û
>WENV181876134
OGXC01002141
[OGXC] human gut metagenome; faeces
4210
4135
-
fMet
CAT
[ENA]
¡û
>W141259095
CBYM010000009
Bacillota
Clostridium saudiense JCC [CBYM]
102536
102461
-
Met
CAT
[ENA]
¡û
>W141259110
CBYM010000018
Bacillota
Clostridium saudiense JCC [CBYM]
63167
63242
+
Met
CAT
[ENA]
¡û
>W141259111
CBYM010000018
Bacillota
Clostridium saudiense JCC [CBYM]
58081
58006
-
Met
CAT
[ENA]
¡û
>W141265601
CCFI01000018
Bacillota
Clostridium jeddahitimonense CL-2 [CCFI]
425459
425384
-
Met
CAT
[ENA]
¡û
>WENV182816054
OJYV01003177
[OJYV] human gut metagenome; human gut
115
190
+
fMet
CAT
[ENA]
¡û
>WENV183098046
OLNE01030436
[OLNE] human gut metagenome; faeces
569
494
-
fMet
CAT
[ENA]
¡û
>WENV183196823
OLPU01004720
[OLPU] human gut metagenome; faeces
13
88
+
fMet
CAT
[ENA]
¡û
>WENV183234006
OLQV01008935
[OLQV] human gut metagenome; faeces
2469
2544
+
fMet
CAT
[ENA]
¡û
>WENV183242148
OLRB01005673
[OLRB] human gut metagenome; faeces
1844
1769
-
fMet
CAT
[ENA]
¡û
>WENV183470233
OMEJ01006948
[OMEJ] human gut metagenome; feces
978
1053
+
fMet
CAT
[ENA]
¡û
>WENV183506303
OMGY01000520
[OMGY] human gut metagenome; human gut
39553
39628
+
fMet
CAT
[ENA]
¡û
>WENV183506304
OMGY01000520
[OMGY] human gut metagenome; human gut
27499
27424
-
fMet
CAT
[ENA]
¡û
>WENV170596447
FUHO01000029
[FUHO] jellyfish metagenome; jellyfish
3541
3616
+
Met
CAT
[ENA]
¡û
>WENV170639154
JFJP01001186
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4697
4772
+
Met
CAT
[ENA]
¡û
>WENV170700008
LIDZ01000201
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
18066
17991
-
Met
CAT
[ENA]
¡û
>WENV170700011
LIDZ01000201
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
17643
17568
-
Met
CAT
[ENA]
¡û
>C181031762
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
2306622
2306697
+
Met
CAT
-
¡û
>C181031979
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
2776876
2776951
+
Met
CAT
-
¡û
>C191025652
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
2088434
2088359
-
Met
CAT
-
¡û
>C191051299
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
315012
314937
-
Met
CAT
-
¡û
>W09133485
ACPD01000021
Bacillota
Clostridium cellulovorans 743B [ACPD]
195
120
-
Met
CAT
[ENA]
¡û
>C141008106
CP006763
Bacillota
Clostridium autoethanogenum DSM 10061 [CP006763]
3871397
3871472
+
Met
CAT
[Ensembl]
¡û
>W2010249626
CABIXQ020000024
Bacillota
Clostridium disporicum [CABIXQ]
48079
48004
-
fMet
CAT
[ENA]
¡û
>W2010282707
CABMIZ010000035
Bacillota
Clostridium septicum [CABMIZ]
25246
25171
-
fMet
CAT
[ENA]
¡û
>W2011414707
RFAQ01000035
Bacillota
Clostridium autoethanogenum H21-9 [RFAQ]
34527
34602
+
fMet
CAT
[ENA]
¡û
>W2011640935
SMUS01000010
Bacillota
Clostridium cuniculi 1 [SMUS]
33482
33557
+
fMet
CAT
[ENA]
¡û
>W2110157717
JAASHM010000009
Bacillota
Clostridium sp. K13 [JAASHM]
27663
27738
+
fMet
CAT
[ENA]
¡û
>W2110157733
JAASHM010000040
Bacillota
Clostridium sp. K13 [JAASHM]
15518
15593
+
fMet
CAT
[ENA]
¡û
>W2110244528
JACOOO010000016
Bacillota
Clostridium sp. NSJ-6 [JACOOO]
203897
203972
+
fMet
CAT
[ENA]
¡û
>W2110244646
JACOOP010000060
Bacillota
Clostridium sp. NSJ-49 [JACOOP]
3401
3326
-
fMet
CAT
[ENA]
¡û
>W2110365468
JADPBQ010000002
Bacillota
Clostridium sp. 1001271B_151109_B4 [JADPBQ]
225979
225904
-
fMet
CAT
[ENA]
¡û
>W2110365515
JADPBQ010000031
Bacillota
Clostridium sp. 1001271B_151109_B4 [JADPBQ]
4897
4972
+
fMet
CAT
[ENA]
¡û
>W2110367506
JADPEL010000038
Bacillota
Clostridium sp. D53t1_180928_C8 [JADPEL]
10472
10547
+
fMet
CAT
[ENA]
¡û
>W2110367507
JADPEL010000038
Bacillota
Clostridium sp. D53t1_180928_C8 [JADPEL]
15357
15432
+
fMet
CAT
[ENA]
¡û
>W2110368656
JADPGF010000002
Bacillota
Clostridium saudiense 1001713B170131_170501_D2 [JADPGF]
253631
253706
+
fMet
CAT
[ENA]
¡û
>W2110368657
JADPGF010000002
Bacillota
Clostridium saudiense 1001713B170131_170501_D2 [JADPGF]
240556
240481
-
fMet
CAT
[ENA]
¡û
>W2110672569
JAIFTO010000034
Bacillota
Clostridium chauvoei 12S0468 [JAIFTO]
14034
13959
-
fMet
CAT
[ENA]
¡û
>W2110672728
JAIFTQ010000035
Bacillota
Clostridium chauvoei BS94-02 [JAIFTQ]
10312
10387
+
fMet
CAT
[ENA]
¡û
>W2110673118
JAIFTV010000036
Bacillota
Clostridium chauvoei BS90-02 [JAIFTV]
10309
10384
+
fMet
CAT
[ENA]
¡û
>W2110673199
JAIFTW010000034
Bacillota
Clostridium chauvoei BS109-02 [JAIFTW]
10312
10387
+
fMet
CAT
[ENA]
¡û
>W2110673281
JAIFTX010000034
Bacillota
Clostridium chauvoei S0260-09 [JAIFTX]
10312
10387
+
fMet
CAT
[ENA]
¡û
>W2110673692
JAIFUC010000035
Bacillota
Clostridium chauvoei 12S0466 [JAIFUC]
10312
10387
+
fMet
CAT
[ENA]
¡û
>W2110673778
JAIFUD010000034
Bacillota
Clostridium chauvoei 12S0469 [JAIFUD]
14034
13959
-
fMet
CAT
[ENA]
¡û
>W2110673860
JAIFUE010000035
Bacillota
Clostridium chauvoei 12S0470 [JAIFUE]
14034
13959
-
fMet
CAT
[ENA]
¡û
>W2110674347
JAIFUK010000036
Bacillota
Clostridium chauvoei 11S0318 [JAIFUK]
10312
10387
+
fMet
CAT
[ENA]
¡û
>W2110674433
JAIFUL010000036
Bacillota
Clostridium chauvoei BS80-01 [JAIFUL]
14034
13959
-
fMet
CAT
[ENA]
¡û
>W2110674591
JAIFUN010000035
Bacillota
Clostridium chauvoei 13S0851 [JAIFUN]
10312
10387
+
fMet
CAT
[ENA]
¡û
>W2110674673
JAIFUO010000035
Bacillota
Clostridium chauvoei 13S0854 [JAIFUO]
10312
10387
+
fMet
CAT
[ENA]
¡û
>W2110675164
JAIFUU010000034
Bacillota
Clostridium chauvoei S0041-08 [JAIFUU]
10312
10387
+
fMet
CAT
[ENA]
¡û
>W2110675249
JAIFUV010000037
Bacillota
Clostridium chauvoei 15S0088 [JAIFUV]
14034
13959
-
fMet
CAT
[ENA]
¡û
>W2110675491
JAIFUY010000036
Bacillota
Clostridium chauvoei 15S0008 [JAIFUY]
14035
13960
-
fMet
CAT
[ENA]
¡û
>W2110675573
JAIFUZ010000036
Bacillota
Clostridium chauvoei S0099-08 [JAIFUZ]
14034
13959
-
fMet
CAT
[ENA]
¡û
>W2110675733
JAIFVB010000035
Bacillota
Clostridium chauvoei S0101-08 [JAIFVB]
10312
10387
+
fMet
CAT
[ENA]
¡û
>W2110675815
JAIFVC010000035
Bacillota
Clostridium chauvoei S0105-08 [JAIFVC]
10312
10387
+
fMet
CAT
[ENA]
¡û
>W2110676129
JAIFVG010000036
Bacillota
Clostridium chauvoei S0098-08 [JAIFVG]
10312
10387
+
fMet
CAT
[ENA]
¡û
>W2110676376
JAIFVJ010000034
Bacillota
Clostridium chauvoei BS169-00 [JAIFVJ]
10312
10387
+
fMet
CAT
[ENA]
¡û
>W2110676606
JAIFVM010000035
Bacillota
Clostridium chauvoei 16S0574 [JAIFVM]
14034
13959
-
fMet
CAT
[ENA]
¡û
>W2110676772
JAIFVO010000034
Bacillota
Clostridium chauvoei S0132-09 [JAIFVO]
14024
13949
-
fMet
CAT
[ENA]
¡û
>W2110677010
JAIFVR010000039
Bacillota
Clostridium chauvoei S0134-09 [JAIFVR]
10312
10387
+
fMet
CAT
[ENA]
¡û
>W2110677093
JAIFVS010000036
Bacillota
Clostridium chauvoei BC93-06 [JAIFVS]
10311
10386
+
fMet
CAT
[ENA]
¡û
>W2110677175
JAIFVT010000034
Bacillota
Clostridium chauvoei BC97-06 [JAIFVT]
10312
10387
+
fMet
CAT
[ENA]
¡û
>W2110677242
JAIFVU010000034
Bacillota
Clostridium chauvoei BC103-06 [JAIFVU]
10312
10387
+
fMet
CAT
[ENA]
¡û
>W2110677347
JAIFVV010000035
Bacillota
Clostridium chauvoei BC138-06 [JAIFVV]
14034
13959
-
fMet
CAT
[ENA]
¡û
>C231418605
CP099799
Bacillota
Clostridium septicum RMA 8861 [CP099799]
361360
361285
-
fMet
CAT
-
¡û
>W2120000229
JAASHL010000009
Bacillota
K12(2020) [JAASHL]
94922
94847
-
Met
CAT
[ENA]
¡û
>W2120000252
JAASHL010000043
Bacillota
K12(2020) [JAASHL]
15518
15593
+
Met
CAT
[ENA]
¡û
>C241297425
CP131445
Bacillota
Clostridium septicum WW106 [CP131445]
354892
354817
-
fMet
CAT
-
¡û
>C10103570
CP001666
Bacillota
Clostridium ljungdahlii DSM 13528 [CP001666]
1613753
1613828
+
Met
CAT
[Ensembl]
¡û
>W11184348
BABR01000472
Bacillota
Clostridium cellulovorans 743B [BABR]
166
91
-
Met
CAT
[ENA]
¡û
>W1610099876
CYYT01000002
Bacillota
Clostridium disporicum [CYYT]
19115
19190
+
Met
CAT
[ENA]
¡û
>W1610099877
CYYT01000002
Bacillota
Clostridium disporicum [CYYT]
6432
6357
-
Met
CAT
[ENA]
¡û
>W1610101626
CYZV01000012
Bacillota
Clostridium disporicum [CYZV]
66534
66609
+
Met
CAT
[ENA]
¡û
>W1610101627
CYZV01000012
Bacillota
Clostridium disporicum [CYZV]
53282
53207
-
Met
CAT
[ENA]
¡û
>W1610101802
CYZX01000024
Bacillota
Clostridium disporicum [CYZX]
48079
48004
-
Met
CAT
[ENA]
¡û
>W1610507760
FLTT01000035
Bacillota
Clostridium septicum [FLTT]
25246
25171
-
Met
CAT
[ENA]
¡û
>W1610635719
LITQ01000054
Bacillota
Clostridium coskatii [LITQ]
1267
1192
-
Met
CAT
[ENA]
¡û
>W1610888081
LROR01000099
Bacillota
Clostridium coskatii [LROR]
711
636
-
Met
CAT
[ENA]
¡û
>W1610888112
LROS01000021
Bacillota
Clostridium ragsdalei P11 [LROS]
602
527
-
Met
CAT
[ENA]
¡û
>W1710102631
CYYT01000002
Bacillota
Clostridium disporicum [CYYT]
19115
19190
+
Met
CAT
[ENA]
¡û
>W1710102632
CYYT01000002
Bacillota
Clostridium disporicum [CYYT]
6432
6357
-
Met
CAT
[ENA]
¡û
>W1710104381
CYZV01000012
Bacillota
Clostridium disporicum [CYZV]
66534
66609
+
Met
CAT
[ENA]
¡û
>W1710104382
CYZV01000012
Bacillota
Clostridium disporicum [CYZV]
53282
53207
-
Met
CAT
[ENA]
¡û
>W1710104557
CYZX01000024
Bacillota
Clostridium disporicum [CYZX]
48079
48004
-
Met
CAT
[ENA]
¡û
>W1710499978
FLTT01000035
Bacillota
Clostridium septicum [FLTT]
25246
25171
-
Met
CAT
[ENA]
¡û
>W1710770427
LITQ01000054
Bacillota
Clostridium coskatii [LITQ]
1267
1192
-
Met
CAT
[ENA]
¡û
>W1710770463
LITR01000007
Bacillota
Clostridium autoethanogenum [LITR]
732
657
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK