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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.328316 (35 seq.)
>W131178639
ARLS01000036
Deinococcota
Deinococcus apachensis DSM 19763 [ARLS]
97973
98045
+
Gly
CCC
[ENA]
¡û
>C007760
CP000359
Deinococcota
Deinococcus geothermalis DSM 11300 [CP000359]
700106
700034
-
Gly
CCC
[Ensembl]
¡û
>C007955
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2063699
2063627
-
Gly
CCC
[Ensembl]
¡û
>WENV180232531
OBCO01000744
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
341
269
-
Gly
CCC
[ENA]
¢þ
>WENV180233504
OBCP01000719
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
341
269
-
Gly
CCC
[ENA]
¢þ
>WENV180569937
OCLR01000947
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
341
269
-
Gly
CCC
[ENA]
¢þ
>WENV180570879
OCLS01000941
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
341
269
-
Gly
CCC
[ENA]
¢þ
>WENV180571855
OCLT01000678
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
341
269
-
Gly
CCC
[ENA]
¢þ
>WENV180574127
OCLW01000738
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
341
269
-
Gly
CCC
[ENA]
¢þ
>WENV180640144
OCRL01000672
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
341
269
-
Gly
CCC
[ENA]
¢þ
>WENV180641118
OCRM01000728
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
341
269
-
Gly
CCC
[ENA]
¢þ
>W141154794
AXLL01000196
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
5310
5382
+
Gly
CCC
[ENA]
¡û
>W141220841
AZYF01000777
Deinococcota
Deinococcus pimensis DSM 21231 [AZYF]
1427
1352
-
Gly
CCC
[ENA]
¡û
>C181179578
CP029494
Deinococcota
Deinococcus irradiatisoli 17bor-2 [CP029494]
1070214
1070142
-
Gly
CCC
-
¡û
>C181185116
CP029774
Deinococcota
Deinococcus actinosclerus SJTR [CP029774]
867208
867136
-
Gly
CCC
-
¡û
>C181196450
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
200644
200716
+
Gly
CCC
-
¡û
>W141525698
JHAC01000048
Deinococcota
Deinococcus phoenicis [JHAC]
48031
48103
+
Gly
CCC
[ENA]
¡û
>W141561463
JHYL01000006
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
155526
155598
+
Gly
CCC
[ENA]
¡û
>W141702090
JMLF01000047
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
708
636
-
Gly
CCC
[ENA]
¡û
>W141821105
JQNI01000002
Deinococcota
Deinococcus sp. YIM 77859 [JQNI]
1020492
1020564
+
Gly
CCC
[ENA]
¡û
>W1911597498
PNOR01000040
Deinococcota
Deinococcus planocerae XY-FW106 [PNOR]
578
506
-
Gly
CCC
[ENA]
¡û
>W1911788260
QYCQ01000011
Deinococcota
Deinococcus sp. RM [QYCQ]
450
378
-
Gly
CCC
[ENA]
¡û
>W1810423366
PYSV01000042
Deinococcota
Deinococcus arcticus OD32 [PYSV]
8247
8319
+
Gly
CCC
[ENA]
¡û
>W1810671608
QJSX01000009
Deinococcota
Deinococcus yavapaiensis KR-236 DSM 18048 [QJSX]
202941
203013
+
Gly
CCC
[ENA]
¡û
>C10105357
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2063699
2063627
-
Gly
CCC
[Ensembl]
¡û
>C11107156
CP002454
Deinococcota
Deinococcus maricopensis DSM 21211 [CP002454]
923212
923140
-
Gly
CCC
[Ensembl]
¡û
>C11107284
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2063699
2063627
-
Gly
CCC
[Ensembl]
¡û
>C121002092
CP002191
Deinococcota
Deinococcus gobiensis I-0 [CP002191]
1251646
1251574
-
Gly
CCC
[Ensembl]
¡û
>C161061621
CP013910
Deinococcota
Deinococcus actinosclerus BM2 [CP013910]
795481
795409
-
Gly
CCC
[Ensembl]
¡û
>C161082959
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
661982
662054
+
Gly
CCC
-
¡û
>W1610061581
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
2598887
2598959
+
Gly
CCC
[ENA]
¡û
>C131003563
CP003382
Deinococcota
Deinococcus peraridilitoris DSM 19664 [CP003382]
997187
997262
+
Gly
CCC
[Ensembl]
¡û
>W1710059246
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
2598887
2598959
+
Gly
CCC
[ENA]
¡û
>W1710542293
FNZA01000024
Deinococcota
Deinococcus reticulitermitis [FNZA]
25970
26042
+
Gly
CCC
[ENA]
¡û
>W1710605315
FWWU01000009
Deinococcota
Deinococcus hopiensis KR-140 [FWWU]
2072306
2072378
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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