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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.328351 (104 seq.)
>W1711385148
MEDT01000167
Bacteroidota
Cytophagaceae bacterium SCN 52-12 [MEDT]
1682
1609
-
Lys
TTT
[ENA]
¡û
>W1711503849
MKTZ01000013
Bacteroidota
Sphingobacteriales bacterium 50-39 [MKTZ]
2616
2689
+
Lys
TTT
[ENA]
¡û
>W1712050000
NFUV01000001
Bacteroidota
Chitinophagaceae bacterium IBVUCB2 [NFUV]
583943
583870
-
Lys
TTT
[ENA]
¡û
>W131219002
ATYE01000006
Bacteroidota
Asinibacterium sp. OR43 OR43 [ATYE]
142075
142000
-
Lys
TTT
[ENA]
¡û
>W131237217
AUNO01000263
Bacteroidota
Chitinophaga sp. JGI 0001002-D04 [AUNO]
18018
17945
-
Lys
TTT
[ENA]
¡û
>W131237226
AUNO01000288
Bacteroidota
Chitinophaga sp. JGI 0001002-D04 [AUNO]
39898
39823
-
Lys
TTT
[ENA]
¡û
>WENV180025276
FTIN01077466
[FTIN] metagenome; soil
111
38
-
Lys
TTT
[ENA]
¢þ
>WENV180344968
OBLL01419722
[OBLL] soil metagenome; soil
111
184
+
Lys
TTT
[ENA]
¢þ
>WENV180591813
OCOV01110897
[OCOV] marine metagenome; ENVO:01000301
258
185
-
Lys
TTT
[ENA]
¢þ
>WENV181222769
OFDC01000238
[OFDC] hot springs metagenome; Water
26306
26233
-
Lys
TTT
[ENA]
¢þ
>WENV181222770
OFDC01000238
[OFDC] hot springs metagenome; Water
26149
26076
-
Lys
TTT
[ENA]
¢þ
>WENV181226758
OFDN01000042
[OFDN] hot springs metagenome; Water
68670
68597
-
Lys
TTT
[ENA]
¢þ
>WENV181307918
OFIS01000035
[OFIS] sludge metagenome; sludge
33526
33599
+
Lys
TTT
[ENA]
¢þ
>WENV181308094
OFIS01000206
[OFIS] sludge metagenome; sludge
24857
24930
+
Lys
TTT
[ENA]
¢þ
>WENV181308257
OFIS01001650
[OFIS] sludge metagenome; sludge
854
927
+
Lys
TTT
[ENA]
¢þ
>WENV181312065
OFJB01037743
[OFJB] sludge metagenome; sludge
431
358
-
Lys
TTT
[ENA]
¢þ
>WENV181312231
OFJB01058926
[OFJB] sludge metagenome; sludge
265
192
-
Lys
TTT
[ENA]
¢þ
>WENV181369679
OFQP01020374
[OFQP] freshwater metagenome; Freshwater Lake
458
531
+
Lys
TTT
[ENA]
¢þ
>WENV181370771
OFQT01009689
[OFQT] freshwater metagenome; Freshwater Lake
678
751
+
Lys
TTT
[ENA]
¢þ
>WENV181401686
OFTX01002700
[OFTX] sludge metagenome; sludge
1116
1189
+
Lys
TTT
[ENA]
¢þ
>WENV181401851
OFTX01010475
[OFTX] sludge metagenome; sludge
39
112
+
Lys
TTT
[ENA]
¢þ
>WENV181402020
OFTY01000037
[OFTY] sludge metagenome; sludge
33525
33598
+
Lys
TTT
[ENA]
¢þ
>WENV181402200
OFTY01000230
[OFTY] sludge metagenome; sludge
24862
24935
+
Lys
TTT
[ENA]
¢þ
>WENV181402650
OFTY01013560
[OFTY] sludge metagenome; sludge
923
996
+
Lys
TTT
[ENA]
¢þ
>W141168941
AXVJ01000054
Bacteroidota
Runella limosa DSM 17973 [AXVJ]
52535
52460
-
Lys
TTT
[ENA]
¡û
>WENV181839569
OGVO01003495
[OGVO] freshwater metagenome; freshwater
630
703
+
Lys
TTT
[ENA]
¢þ
>WENV181843251
OGVU01004925
[OGVU] freshwater metagenome; freshwater
681
608
-
Lys
TTT
[ENA]
¢þ
>WENV181854922
OGWK01038434
[OGWK] freshwater metagenome; freshwater
359
432
+
Lys
TTT
[ENA]
¢þ
>WENV181857670
OGWO01027819
[OGWO] freshwater metagenome; freshwater
304
231
-
Lys
TTT
[ENA]
¢þ
>W141220178
AZXP01000001
Bacteroidota
Asinibacterium sp. OR53 OR53 [AZXP]
3344119
3344194
+
Lys
TTT
[ENA]
¡û
>ENV08001991
ABOK01218729
mosquito metagenome; viral fraction from Mung bean nuclease digestion of DNA from mixed species mosquitoes collected in Mission Valley in San Diego, CA
79
6
-
Lys
TTT
[ENA]
¡û
>WENV170985336
MWVW01070037
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
170
95
-
Lys
TTT
[ENA]
¢þ
>WENV170993693
MWWB01409433
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
136
209
+
Lys
TTT
[ENA]
¢þ
>C181001911
AP017422
Bacteroidota
Filimonas lacunae NBRC 104114 [AP017422]
1940697
1940770
+
Lys
TTT
-
¡û
>C181001912
AP017422
Bacteroidota
Filimonas lacunae NBRC 104114 [AP017422]
1942789
1942862
+
Lys
TTT
-
¡û
>C181001913
AP017422
Bacteroidota
Filimonas lacunae NBRC 104114 [AP017422]
1942920
1942993
+
Lys
TTT
-
¡û
>C181001952
AP017422
Bacteroidota
Filimonas lacunae NBRC 104114 [AP017422]
1946788
1946715
-
Lys
TTT
-
¡û
>C191073401
CP031030
Bacteroidota
Runella sp. SP2 [CP031030]
1043605
1043532
-
Lys
TTT
-
¡û
>W09108609
ABTK01000001
Bacteroidota
Chitinophaga pinensis DSM 2588 [ABTK]
746131
746056
-
Lys
TTT
[ENA]
¡û
>W09108610
ABTK01000001
Bacteroidota
Chitinophaga pinensis DSM 2588 [ABTK]
647946
647871
-
Lys
TTT
[ENA]
¡û
>W09108611
ABTK01000001
Bacteroidota
Chitinophaga pinensis DSM 2588 [ABTK]
609517
609442
-
Lys
TTT
[ENA]
¡û
>W09108628
ABTK01000003
Bacteroidota
Chitinophaga pinensis DSM 2588 [ABTK]
658156
658229
+
Lys
TTT
[ENA]
¡û
>W09108629
ABTK01000003
Bacteroidota
Chitinophaga pinensis DSM 2588 [ABTK]
87171
87098
-
Lys
TTT
[ENA]
¡û
>W1910941833
NJFZ01000021
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
73484
73558
+
Lys
TTT
[ENA]
¡û
>W1910941834
NJFZ01000021
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
73639
73712
+
Lys
TTT
[ENA]
¡û
>W1910941835
NJFZ01000021
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
73798
73873
+
Lys
TTT
[ENA]
¡û
>W1910941847
NJFZ01000052
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
499
425
-
Lys
TTT
[ENA]
¡û
>W1910941848
NJFZ01000052
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
346
273
-
Lys
TTT
[ENA]
¡û
>W1910941849
NJFZ01000052
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
192
118
-
Lys
TTT
[ENA]
¡û
>W1910941851
NJFZ01000064
Bacteroidota
Flectobacillus sp. BAB-3569 [NJFZ]
283
357
+
Lys
TTT
[ENA]
¡û
>W1911741141
QUZZ01000002
Bacteroidota
Taibaiella helva F-4 [QUZZ]
589512
589585
+
Lys
TTT
[ENA]
¡û
>W1911741173
QUZZ01000017
Bacteroidota
Taibaiella helva F-4 [QUZZ]
17347
17274
-
Lys
TTT
[ENA]
¡û
>W1911744287
QVNU01000007
Bacteroidota
Taibaiella koreensis THG-DT86 [QVNU]
447761
447834
+
Lys
TTT
[ENA]
¡û
>W1911744290
QVNU01000008
Bacteroidota
Taibaiella koreensis THG-DT86 [QVNU]
14381
14308
-
Lys
TTT
[ENA]
¡û
>W1911787341
QXZY01000004
Bacteroidota
Chitinophaga barathri YLT18 [QXZY]
10232
10305
+
Lys
TTT
[ENA]
¡û
>W1810351392
PVEQ01000002
Bacteroidota
Sediminibacterium magnilacihabitans DSM 22423 [PVEQ]
150245
150318
+
Lys
TTT
[ENA]
¡û
>W1810400483
PYGD01000002
Bacteroidota
Taibaiella chishuiensis CGMCC 1.12700 [PYGD]
122120
122193
+
Lys
TTT
[ENA]
¡û
>W1810400501
PYGD01000007
Bacteroidota
Taibaiella chishuiensis CGMCC 1.12700 [PYGD]
191950
192023
+
Lys
TTT
[ENA]
¡û
>W1810577673
QEOK01000006
Bacteroidota
Filimonas sp. YR581 [QEOK]
304174
304101
-
Lys
TTT
[ENA]
¡û
>W1810577674
QEOK01000006
Bacteroidota
Filimonas sp. YR581 [QEOK]
289053
288980
-
Lys
TTT
[ENA]
¡û
>W1810577675
QEOK01000006
Bacteroidota
Filimonas sp. YR581 [QEOK]
280963
280890
-
Lys
TTT
[ENA]
¡û
>W1810586468
QFFJ01000002
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
1684241
1684316
+
Lys
TTT
[ENA]
¡û
>W1810586470
QFFJ01000002
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
2159622
2159695
+
Lys
TTT
[ENA]
¡û
>W1810586471
QFFJ01000002
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
2191677
2191750
+
Lys
TTT
[ENA]
¡û
>W1810586472
QFFJ01000002
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
2202245
2202318
+
Lys
TTT
[ENA]
¡û
>W1810586473
QFFJ01000002
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
2289515
2289588
+
Lys
TTT
[ENA]
¡û
>W1810586474
QFFJ01000002
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
2382251
2382324
+
Lys
TTT
[ENA]
¡û
>W1810586475
QFFJ01000002
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
2392685
2392758
+
Lys
TTT
[ENA]
¡û
>W1810586476
QFFJ01000002
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
2603047
2603120
+
Lys
TTT
[ENA]
¡û
>W1810586477
QFFJ01000002
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
2927262
2927335
+
Lys
TTT
[ENA]
¡û
>W1810586478
QFFJ01000002
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
3115543
3115616
+
Lys
TTT
[ENA]
¡û
>W1810586479
QFFJ01000002
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
3319670
3319743
+
Lys
TTT
[ENA]
¡û
>W1810858483
QTJU01000004
Bacteroidota
Deminuibacter soli K23C18032701 [QTJU]
333881
333954
+
Lys
TTT
[ENA]
¡û
>W1810858484
QTJU01000004
Bacteroidota
Deminuibacter soli K23C18032701 [QTJU]
362068
362141
+
Lys
TTT
[ENA]
¡û
>W1810913041
QVMT01000010
Bacteroidota
Emticicia sp. C21 [QVMT]
74052
74125
+
Lys
TTT
[ENA]
¡û
>C10103732
CP001699
Bacteroidota
Chitinophaga pinensis DSM 2588 [CP001699]
3609757
3609832
+
Lys
TTT
[Ensembl]
¡û
>C10103733
CP001699
Bacteroidota
Chitinophaga pinensis DSM 2588 [CP001699]
3707945
3708020
+
Lys
TTT
[Ensembl]
¡û
>C10103734
CP001699
Bacteroidota
Chitinophaga pinensis DSM 2588 [CP001699]
3746374
3746449
+
Lys
TTT
[Ensembl]
¡û
>C10103736
CP001699
Bacteroidota
Chitinophaga pinensis DSM 2588 [CP001699]
6392212
6392285
+
Lys
TTT
[Ensembl]
¡û
>C10103755
CP001699
Bacteroidota
Chitinophaga pinensis DSM 2588 [CP001699]
5821420
5821347
-
Lys
TTT
[Ensembl]
¡û
>C121003572
CP002961
Bacteroidota
Emticicia oligotrophica DSM 17448 [CP002961]
4647836
4647911
+
Lys
TTT
[Ensembl]
¡û
>C121003573
CP002961
Bacteroidota
Emticicia oligotrophica DSM 17448 [CP002961]
4647993
4648068
+
Lys
TTT
[Ensembl]
¡û
>W1610617805
LGYU01000016
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
52492
52565
+
Lys
TTT
[ENA]
¡û
>W1610617806
LGYU01000016
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
117859
117934
+
Lys
TTT
[ENA]
¡û
>W1610935537
LUKG01000072
Bacteroidota
Flavihumibacter sp. CACIAM 22H1 [LUKG]
5307
5380
+
Lys
TTT
[ENA]
¡û
>W1710515121
FNBN01000002
Bacteroidota
Chitinophaga filiformis [FNBN]
1119103
1119178
+
Lys
TTT
[ENA]
¡û
>W1710515123
FNBN01000002
Bacteroidota
Chitinophaga filiformis [FNBN]
652089
652014
-
Lys
TTT
[ENA]
¡û
>W1710515125
FNBN01000003
Bacteroidota
Chitinophaga filiformis [FNBN]
1292200
1292275
+
Lys
TTT
[ENA]
¡û
>W1710528858
FNNO01000003
Bacteroidota
Hydrobacter penzbergensis [FNNO]
143527
143602
+
Lys
TTT
[ENA]
¡û
>W1710570059
FOUX01000001
Bacteroidota
Chitinophaga sp. YR627 [FOUX]
1034048
1034121
+
Lys
TTT
[ENA]
¡û
>W1710570061
FOUX01000001
Bacteroidota
Chitinophaga sp. YR627 [FOUX]
397787
397712
-
Lys
TTT
[ENA]
¡û
>W1710570112
FOUX01000007
Bacteroidota
Chitinophaga sp. YR627 [FOUX]
282079
282154
+
Lys
TTT
[ENA]
¡û
>W1710570113
FOUX01000007
Bacteroidota
Chitinophaga sp. YR627 [FOUX]
367140
367213
+
Lys
TTT
[ENA]
¡û
>W1710570114
FOUX01000007
Bacteroidota
Chitinophaga sp. YR627 [FOUX]
394915
394990
+
Lys
TTT
[ENA]
¡û
>W1710592523
FRCN01000008
Bacteroidota
Chitinophaga sp. CF418 [FRCN]
416717
416790
+
Lys
TTT
[ENA]
¡û
>W1710592534
FRCN01000019
Bacteroidota
Chitinophaga sp. CF418 [FRCN]
141981
142054
+
Lys
TTT
[ENA]
¡û
>W1710592536
FRCN01000020
Bacteroidota
Chitinophaga sp. CF418 [FRCN]
33700
33773
+
Lys
TTT
[ENA]
¡û
>W1710599385
FTOR01000008
Bacteroidota
Filimonas lacunae [FTOR]
307532
307607
+
Lys
TTT
[ENA]
¡û
>W1710599386
FTOR01000008
Bacteroidota
Filimonas lacunae [FTOR]
313623
313548
-
Lys
TTT
[ENA]
¡û
>W1710599387
FTOR01000008
Bacteroidota
Filimonas lacunae [FTOR]
311531
311456
-
Lys
TTT
[ENA]
¡û
>W1710599388
FTOR01000008
Bacteroidota
Filimonas lacunae [FTOR]
311400
311325
-
Lys
TTT
[ENA]
¡û
>W1710600265
FUWH01000008
Bacteroidota
Sediminibacterium ginsengisoli [FUWH]
51979
51906
-
Lys
TTT
[ENA]
¡û
>W1710743858
LGYU01000016
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
52492
52565
+
Lys
TTT
[ENA]
¡û
>W1710743859
LGYU01000016
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
117859
117934
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK