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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.328418 (56 seq.)
>W1711679785
MRVI01000001
Bacillota
Paenibacillus ihbetae IHBB 9951 [MRVI]
3522129
3522054
-
Asn
GTT
[ENA]
¡û
>W1711979179
NDGJ01000049
Bacillota
Paenibacillus apiarius [NDGJ]
165462
165387
-
Asn
GTT
[ENA]
¡û
>W1711979268
NDGK01000047
Bacillota
Paenibacillus thiaminolyticus [NDGK]
329843
329918
+
Asn
GTT
[ENA]
¡û
>C171099974
CP019794
Bacillota
Paenibacillus larvae subsp. pulvifaciens ATCC 13537 [CP019794]
2890745
2890820
+
Asn
GTT
-
¡û
>C171104934
CP020327
Bacillota
Paenibacillus larvae subsp. pulvifaciens CCM 38 [CP020327]
2551009
2551084
+
Asn
GTT
-
¡û
>C171109111
CP020557
Bacillota
Paenibacillus larvae subsp. pulvifaciens SAG 10367 [CP020557]
2709043
2709118
+
Asn
GTT
-
¡û
>W131239115
BALG01000048
Bacillota
Paenibacillus popilliae ATCC 14706 [BALG]
34022
34097
+
Asn
GTT
[ENA]
¡û
>W131239094
BALG01000016
Bacillota
Paenibacillus popilliae ATCC 14706 [BALG]
18
93
+
Asn
GTT
[ENA]
¡û
>W131239128
BALG01000180
Bacillota
Paenibacillus popilliae ATCC 14706 [BALG]
77
2
-
Asn
GTT
[ENA]
¡û
>W131239129
BALG01000219
Bacillota
Paenibacillus popilliae ATCC 14706 [BALG]
124
199
+
Asn
GTT
[ENA]
¡û
>W131239144
BALG01000227
Bacillota
Paenibacillus popilliae ATCC 14706 [BALG]
18
93
+
Asn
GTT
[ENA]
¡û
>W141000962
ADFW01000001
Bacillota
Paenibacillus larvae subsp. larvae DSM 25719 [ADFW]
2911070
2911145
+
Asn
GTT
[ENA]
¡û
>WENV181801388
OGSB01000207
[OGSB] human gut metagenome; fecal sample 5 from infant 3
2922
2847
-
Asn
GTT
[ENA]
¢þ
>WENV181810541
OGSV01000211
[OGSV] human gut metagenome; fecal sample 4 from infant 3
2869
2794
-
Asn
GTT
[ENA]
¢þ
>WENV181822884
OGUH01000154
[OGUH] human gut metagenome; fecal sample 3 from infant 3
2840
2765
-
Asn
GTT
[ENA]
¢þ
>W141277418
JAEO01000059
Bacillota
Bacillus sp. J13 [JAEO]
18288
18363
+
Asn
GTT
[ENA]
¡û
>WENV170705613
LNAP01000021
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
127128
127203
+
Asn
GTT
[ENA]
¢þ
>WENV170708336
LNAP01071003
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
593
668
+
Asn
GTT
[ENA]
¢þ
>W141462576
JFHX01000035
Bacillota
Paenibacillus ehimensis A2 [JFHX]
74
-1
-
Asn
GTT
[ENA]
¡û
>C181021494
CP016809
Bacillota
Paenibacillus ihbetae IHBB 9852 [CP016809]
4432126
4432201
+
Asn
GTT
-
¡û
>C181038484
CP019651
Bacillota
Paenibacillus larvae subsp. larvae ERIC_I [CP019651]
3810740
3810665
-
Asn
GTT
-
¡û
>C181038605
CP019655
Bacillota
Paenibacillus larvae subsp. larvae Eric_III [CP019655]
486409
486484
+
Asn
GTT
-
¡û
>C181038682
CP019659
Bacillota
Paenibacillus larvae subsp. larvae Eric_IV [CP019659]
486447
486522
+
Asn
GTT
-
¡û
>W1910154658
BILX01000090
Bacillota
Paenibacillus ehimensis NBRC 15659 [BILX]
7342
7417
+
Asn
GTT
[ENA]
¡û
>W1910155154
BIMI01000025
Bacillota
Paenibacillus thiaminolyticus NBRC 15656 [BIMI]
55680
55755
+
Asn
GTT
[ENA]
¡û
>W1910155165
BIMI01000161
Bacillota
Paenibacillus thiaminolyticus NBRC 15656 [BIMI]
75
150
+
Asn
GTT
[ENA]
¡û
>W1910155174
BIMI01000183
Bacillota
Paenibacillus thiaminolyticus NBRC 15656 [BIMI]
1020
945
-
Asn
GTT
[ENA]
¡û
>W1910155185
BIMI01000186
Bacillota
Paenibacillus thiaminolyticus NBRC 15656 [BIMI]
647
572
-
Asn
GTT
[ENA]
¡û
>W1910175708
BJCS01000005
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
394848
394773
-
Asn
GTT
[ENA]
¡û
>W1910175729
BJCS01000008
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
301
376
+
Asn
GTT
[ENA]
¡û
>W1911144768
NPBY01000028
Bacillota
Paenibacillus campinasensis 7537-G1 [NPBY]
69814
69889
+
Asn
GTT
[ENA]
¡û
>W1911771199
QXJP01000014
Bacillota
Longirhabdus pacifica SCSIO 06110 [QXJP]
27246
27171
-
Asn
GTT
[ENA]
¡û
>W1911771216
QXJP01000072
Bacillota
Longirhabdus pacifica SCSIO 06110 [QXJP]
315
240
-
Asn
GTT
[ENA]
¡û
>W1911809808
QYZD01000040
Bacillota
Paenibacillus thiaminolyticus BO5 [QYZD]
30813
30738
-
Asn
GTT
[ENA]
¡û
>W1810679759
QKRB01000063
Bacillota
Paenibacillus sambharensis SMB1 [QKRB]
54868
54793
-
Asn
GTT
[ENA]
¡û
>W1810683214
QKVW01000025
Bacillota
Paenibacillus dendritiformis PV3-16 [QKVW]
81588
81663
+
Asn
GTT
[ENA]
¡û
>W11130191
ADZY01000117
Bacillota
Paenibacillus larvae subsp. larvae B-3650 [ADZY]
179
104
-
Asn
GTT
[ENA]
¡û
>W1511585015
LAWY01000039
Bacillota
Paenibacillus larvae MEX14 [LAWY]
26206
26281
+
Asn
GTT
[ENA]
¡û
>W11178688
AGFE01000001
Bacillota
Thermobacillus composti KWC4 [AGFE]
290565
290490
-
Asn
GTT
[ENA]
¡û
>W11178732
AGFE01000042
Bacillota
Thermobacillus composti KWC4 [AGFE]
216
291
+
Asn
GTT
[ENA]
¡û
>C121012977
CP003422
Bacillota
Paenibacillus mucilaginosus K02 [CP003422]
676101
676176
+
Asn
GTT
[Ensembl]
¡û
>C161058209
CP013652
Bacillota
Paenibacillus naphthalenovorans 32O-Y [CP013652]
3259
3334
+
Asn
GTT
[Ensembl]
¡û
>C161058254
CP013652
Bacillota
Paenibacillus naphthalenovorans 32O-Y [CP013652]
3872993
3872918
-
Asn
GTT
[Ensembl]
¡û
>C161058277
CP013652
Bacillota
Paenibacillus naphthalenovorans 32O-Y [CP013652]
3444613
3444538
-
Asn
GTT
[Ensembl]
¡û
>C161058308
CP013653
Bacillota
Paenibacillus sp. 32O-W [CP013653]
842034
842109
+
Asn
GTT
[Ensembl]
¡û
>C161058319
CP013653
Bacillota
Paenibacillus sp. 32O-W [CP013653]
1267398
1267473
+
Asn
GTT
[Ensembl]
¡û
>C161058334
CP013653
Bacillota
Paenibacillus sp. 32O-W [CP013653]
4665671
4665596
-
Asn
GTT
[Ensembl]
¡û
>W1610047470
BBDI01000014
Bacillota
Paenibacillus pinihumi DSM 23905 = JCM 16419 [BBDI]
73
148
+
Asn
GTT
[ENA]
¡û
>W121034231
AHKH01000042
Bacillota
Paenibacillus dendritiformis C454 [AHKH]
35953
36028
+
Asn
GTT
[ENA]
¡û
>C131002431
CP003255
Bacillota
Thermobacillus composti KWC4 [CP003255]
342472
342547
+
Asn
GTT
[Ensembl]
¡û
>C131002468
CP003255
Bacillota
Thermobacillus composti KWC4 [CP003255]
3034336
3034261
-
Asn
GTT
[Ensembl]
¡û
>C131002440
CP003255
Bacillota
Thermobacillus composti KWC4 [CP003255]
1023061
1023136
+
Asn
GTT
[Ensembl]
¡û
>W1610543191
JTHN01000087
Bacillota
Paenibacillus sp. A3 [JTHN]
47956
48031
+
Asn
GTT
[ENA]
¡û
>W1710044075
BBDI01000014
Bacillota
Paenibacillus pinihumi DSM 23905 = JCM 16419 [BBDI]
73
148
+
Asn
GTT
[ENA]
¡û
>W1710518319
FNDY01000009
Bacillota
Paenibacillus naphthalenovorans [FNDY]
182776
182701
-
Asn
GTT
[ENA]
¡û
>W1710646322
JTHN01000087
Bacillota
Paenibacillus sp. A3 [JTHN]
47956
48031
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK