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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.328564 (49 seq.)
>W131228711
AUGE01000002
Thermodesulfobacteriota
Citrifermentans bremense R1 [AUGE]
466098
466022
-
Arg
CCT
[ENA]
¡û
>C010106
AE017180
Thermodesulfobacteriota
Geobacter sulfurreducens PCA [AE017180]
1672860
1672936
+
Arg
CCT
[Ensembl]
¡û
>C010257
CP000698
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [CP000698]
2956615
2956539
-
Arg
CCT
[Ensembl]
¡û
>w024813
AAZA01000042
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [AAZA]
20038
19960
-
Arg
CCT
[ENA]
¡û
>w018120
AASH01000056
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [AASH]
17122
17044
-
Arg
CCT
[ENA]
¡û
>WENV180315414
OBKH01086272
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
298
222
-
Arg
CCT
[ENA]
¡û
>WENV181231594
OFEK01040343
[OFEK] activated sludge metagenome; Anaerobic digester
351
427
+
Arg
CCT
[ENA]
¡û
>C08005217
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
3106269
3106196
-
Arg
CCT
[Ensembl]
¡û
>WENV170004273
AGTN01623408
[AGTN] bioreactor metagenome; poplar biomass
318
394
+
Arg
CCT
[ENA]
¡û
>WENV170006898
AMWB02062588
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
327
251
-
Arg
CCT
[ENA]
¡û
>WENV170660166
JXWT01018250
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
298
222
-
Arg
CCT
[ENA]
¡û
>WENV170661313
JXWV01001047
[JXWV] soil metagenome; rice field; organic FYM Plot
300
224
-
Arg
CCT
[ENA]
¡û
>C191000615
AP017912
Thermodesulfobacteriota
Geobacter sulfurreducens YM18 [AP017912]
1626137
1626213
+
Arg
CCT
-
¡û
>W09105079
AAON01000051
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [AAON]
9108
9184
+
Arg
CCT
[ENA]
¡û
>W09133608
ACPJ01000003
Thermodesulfobacteriota
Geobacter sp. M18 [ACPJ]
198221
198297
+
Arg
CCT
[ENA]
¡û
>C09106370
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
3679156
3679080
-
Arg
CCT
[Ensembl]
¡û
>W1810486149
QAXR01000003
Thermodesulfobacteriota
Geobacter sp. DSM 2909 [QAXR]
235586
235662
+
Arg
CCT
[ENA]
¡û
>W2010088585
BJBU01000002
Thermodesulfobacteriota
Geobacter sp. SVR [BJBU]
50493
50417
-
Arg
CCT
[ENA]
¡û
>W2010145365
BLXX01000001
Thermodesulfobacteriota
Geomonas sp. Red330 [BLXX]
602589
602513
-
Arg
CCT
[ENA]
¡û
>W2010145437
BLXY01000003
Thermodesulfobacteriota
Geomonas sp. Red736 [BLXY]
450123
450047
-
Arg
CCT
[ENA]
¡û
>W2010145469
BLXZ01000001
Thermodesulfobacteriota
Geomonas sp. Red745 [BLXZ]
680424
680348
-
Arg
CCT
[ENA]
¡û
>W2011680830
SRSD01000002
Thermodesulfobacteriota
Geobacter sp. Red88 [SRSD]
168555
168631
+
Arg
CCT
[ENA]
¡û
>W2012220689
VZQZ01000004
Thermodesulfobacteriota
Geobacter sp. Red96 [VZQZ]
155617
155541
-
Arg
CCT
[ENA]
¡û
>W2012220742
VZRA01000002
Thermodesulfobacteriota
Geobacter sp. Red100 [VZRA]
478776
478700
-
Arg
CCT
[ENA]
¡û
>W2110016133
BLJA01000001
Thermodesulfobacteriota
Geobacter sp. AOG2 [BLJA]
2600040
2600116
+
Arg
CCT
[ENA]
¡û
>W2110428465
JAEMHL010000007
Thermodesulfobacteriota
Geomonas anaerohicana Red421 [JAEMHL]
116102
116178
+
Arg
CCT
[ENA]
¡û
>W2110428531
JAEMHM010000017
Thermodesulfobacteriota
Geomesophilobacter sediminis Red875 [JAEMHM]
65784
65860
+
Arg
CCT
[ENA]
¡û
>W2110617997
JAHLMF010000007
Thermodesulfobacteriota
Geomonas diazotrophica Red69 [JAHLMF]
230714
230790
+
Arg
CCT
[ENA]
¡û
>W2110689897
JAINZN010000005
Thermodesulfobacteriota
Geomonas sp. RG17 [JAINZN]
153598
153674
+
Arg
CCT
[ENA]
¡û
>W2110689928
JAINZO010000001
Thermodesulfobacteriota
Geomonas sp. RG53 [JAINZO]
1808968
1808892
-
Arg
CCT
[ENA]
¡û
>C211008656
AP023213
Thermodesulfobacteriota
Geobacter bremensis R4 [AP023213]
1802641
1802717
+
Arg
CCT
-
¡û
>C211020008
AP024469
Thermodesulfobacteriota
Geobacter sp. SVR [AP024469]
998007
998083
+
Arg
CCT
-
¡û
>C211333137
CP074693
Thermodesulfobacteriota
Geobacter sulfurreducens YM35 [CP074693]
1658262
1658338
+
Arg
CCT
-
¡û
>C211349320
CP076723
Thermodesulfobacteriota
Geomonas sp. RG10 [CP076723]
1671276
1671352
+
Arg
CCT
-
¡û
>C211349377
CP076724
Thermodesulfobacteriota
Geomonas sp. RG29 [CP076724]
1498343
1498419
+
Arg
CCT
-
¡û
>C211359163
CP077683
Thermodesulfobacteriota
Geomonas sp. RG2 [CP077683]
1828846
1828770
-
Arg
CCT
-
¡û
>C211359187
CP077684
Thermodesulfobacteriota
Geomonas sp. RF4 [CP077684]
1553724
1553800
+
Arg
CCT
-
¡û
>C211363033
CP078092
Thermodesulfobacteriota
Geobacter sulfurreducens PCA_v2 [CP078092]
1674549
1674625
+
Arg
CCT
-
¡û
>C211363283
CP078096
Thermodesulfobacteriota
Geomonas sp. RG3 [CP078096]
4898855
4898931
+
Arg
CCT
-
¡û
>C231128536
CP072789
Thermodesulfobacteriota
Geobacter sulfurreducens PL [CP072789]
1650018
1650094
+
Arg
CCT
-
¡û
>C231248293
CP087999
Thermodesulfobacteriota
Geomonas sp. RF6 [CP087999]
3822041
3822117
+
Arg
CCT
-
¡û
>C231369682
CP096574
Thermodesulfobacteriota
Geomonas paludis RG22 [CP096574]
3213683
3213607
-
Arg
CCT
-
¡û
>C241066592
CP042466
Thermodesulfobacteriota
Geobacter sp. FeAm09 [CP042466]
1287711
1287635
-
Arg
CCT
-
¡û
>C10107448
CP002031
Thermodesulfobacteriota
Geobacter sulfurreducens KN400 [CP002031]
1642511
1642587
+
Arg
CCT
[Ensembl]
¡û
>C11109592
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
3054921
3054845
-
Arg
CCT
[Ensembl]
¡û
>C161025461
CP010430
Thermodesulfobacteriota
Geobacter sulfurreducens AM-1 [CP010430]
4265095
4265019
-
Arg
CCT
[Ensembl]
¡û
>W1610046448
BBCJ01000032
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
25223
25147
-
Arg
CCT
[ENA]
¡û
>W1710043244
BBCJ01000032
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
25223
25147
-
Arg
CCT
[ENA]
¡û
>W1710087186
BDQG01000001
Thermodesulfobacteriota
Geoanaerobacter pelophilus [BDQG]
1749211
1749135
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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