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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.329096 (61 seq.)
>W1710860967
LMDH01000001
Actinomycetota
Aeromicrobium sp. Root344 [LMDH]
2726324
2726251
-
Lys
CTT
[ENA]
¡û
>W1710863519
LMFE01000010
Actinomycetota
Nocardia sp. Root136 [LMFE]
450929
451004
+
Lys
CTT
[ENA]
¡û
>W1710867981
LMIS01000001
Actinomycetota
Aeromicrobium sp. Root236 [LMIS]
3692057
3691984
-
Lys
CTT
[ENA]
¡û
>W1710877457
LMQC01000020
Actinomycetota
Modestobacter sp. Leaf380 [LMQC]
173571
173496
-
Lys
CTT
[ENA]
¡û
>C171033890
CP014859
Actinomycetota
Actinoalloteichus hymeniacidonis HPA177 [CP014859]
1466360
1466287
-
Lys
CTT
-
¡û
>C171045498
CP016076
Actinomycetota
Actinoalloteichus fjordicus ADI127-7 [CP016076]
1472390
1472315
-
Lys
CTT
-
¡û
>C171045545
CP016077
Actinomycetota
Actinoalloteichus sp. GBA129-24 [CP016077]
1460477
1460402
-
Lys
CTT
-
¡û
>W131087834
AODO01000001
Actinomycetota
Rhodococcus triatomae BKS 15-14 [AODO]
252504
252429
-
Lys
CTT
[ENA]
¡û
>W131087835
AODO01000001
Actinomycetota
Rhodococcus triatomae BKS 15-14 [AODO]
252358
252283
-
Lys
CTT
[ENA]
¡û
>W131161772
AQXZ01000017
Actinomycetota
Smaragdicoccus niigatensis DSM 44881 [AQXZ]
147374
147299
-
Lys
CTT
[ENA]
¡û
>WENV170552645
CXWK01000897
[CXWK] wastewater metagenome; activated sludge
233185
233110
-
Lys
CTT
[ENA]
¢þ
>WENV170690952
LFRM01372590
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4181
4106
-
Lys
CTT
[ENA]
¢þ
>WENV170973210
MTKY01019605
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1080
1153
+
Lys
CTT
[ENA]
¢þ
>WENV170975814
MTKZ01002503
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
95205
95130
-
Lys
CTT
[ENA]
¢þ
>C181067278
CP022521
Actinomycetota
Actinoalloteichus hoggarensis DSM 45943 [CP022521]
1427708
1427633
-
Lys
CTT
-
¡û
>C181144039
CP026952
Actinomycetota
Aeromicrobium chenweiae 592 [CP026952]
1039053
1038978
-
Lys
CTT
-
¡û
>C191051504
CP027482
Actinomycetota
Aeromicrobium sp. A1-2 [CP027482]
763074
763001
-
Lys
CTT
-
¡û
>C191094589
CP032788
Actinomycetota
Corynebacterium xerosis GS 1 [CP032788]
1350496
1350571
+
Lys
CTT
-
¡û
>W09127780
ACLF01001154
Actinomycetota
Aeromicrobium marinum DSM 15272 [ACLF]
895
820
-
Lys
CTT
[ENA]
¡û
>W141775214
JOJN01000007
Actinomycetota
Nocardioides aequoreus [JOJN]
21979
21904
-
Lys
CTT
[ENA]
¡û
>W1911596524
PNHF01000028
Actinomycetota
Corynebacterium xerosis UMB0908 [PNHF]
16384
16309
-
Lys
CTT
[ENA]
¡û
>W1911765401
QXCQ01000091
Actinomycetota
Nakamurella silvestris DSM 102309 [QXCQ]
45555
45482
-
Lys
CTT
[ENA]
¡û
>W1810173147
PJMW01000002
Actinomycetota
Nocardia fluminea DSM 44489 [PJMW]
285378
285453
+
Lys
CTT
[ENA]
¡û
>W1810531640
QCXS01000002
Actinomycetota
Nakamurella deserti 12Sc4-1 [QCXS]
1465068
1464993
-
Lys
CTT
[ENA]
¡û
>W1810870304
QUBR01000002
Actinomycetota
Aeromicrobium endophyticum M2KJ-4 [QUBR]
1328045
1328118
+
Lys
CTT
[ENA]
¡û
>C151013266
CP006841
Actinomycetota
Corynebacterium lactis RW2-5 [CP006841]
753171
753096
-
Lys
CTT
-
¡û
>W1510649784
CVQP01000001
Actinomycetota
Rhodococcus sp. RD6.2 [CVQP]
54028
53953
-
Lys
CTT
[ENA]
¡û
>W1510649785
CVQP01000001
Actinomycetota
Rhodococcus sp. RD6.2 [CVQP]
53888
53813
-
Lys
CTT
[ENA]
¡û
>W1511461048
JVMD01000005
Actinomycetota
Corynebacterium halotolerans 307_CHAL [JVMD]
48837
48762
-
Lys
CTT
[ENA]
¡û
>W121123876
BAEH01000121
Actinomycetota
Gordonia effusa NBRC 100432 [BAEH]
23691
23616
-
Lys
CTT
[ENA]
¡û
>W121125273
BAFX01000046
Actinomycetota
Nocardia concava NBRC 100430 [BAFX]
47720
47645
-
Lys
CTT
[ENA]
¡û
>W1610068194
BCRD01000002
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
252833
252758
-
Lys
CTT
[ENA]
¡û
>W1610068677
BCRN01000003
Actinomycetota
Millisia brevis NBRC 105863 [BCRN]
313921
313848
-
Lys
CTT
[ENA]
¡û
>W1610069043
BCRU01000003
Actinomycetota
Smaragdicoccus niigatensis DSM 44881 = NBRC 103563 [BCRU]
83172
83247
+
Lys
CTT
[ENA]
¡û
>W1610078396
BDAW01000014
Actinomycetota
Nocardia acidivorans NBRC 108247 [BDAW]
6391
6316
-
Lys
CTT
[ENA]
¡û
>W1610078488
BDAX01000028
Actinomycetota
Nocardia alba NBRC 108234 [BDAX]
9270
9345
+
Lys
CTT
[ENA]
¡û
>W1610078901
BDBG01000003
Actinomycetota
Nocardia salmonicida NBRC 100378 [BDBG]
413355
413430
+
Lys
CTT
[ENA]
¡û
>W1610079482
BDBR01000012
Actinomycetota
Nocardia salmonicida NBRC 13393 [BDBR]
113298
113223
-
Lys
CTT
[ENA]
¡û
>W1610079661
BDBU01000037
Actinomycetota
Nocardia jejuensis NBRC 103114 [BDBU]
32577
32652
+
Lys
CTT
[ENA]
¡û
>W1610080025
BDCB01000034
Actinomycetota
Nocardia salmonicida NBRC 100376 [BDCB]
155016
154941
-
Lys
CTT
[ENA]
¡û
>W1610080155
BDCE01000003
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
31464
31389
-
Lys
CTT
[ENA]
¡û
>W1610080181
BDCE01000047
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
12519
12446
-
Lys
CTT
[ENA]
¡û
>W1610723313
LMDH01000001
Actinomycetota
Aeromicrobium sp. Root344 [LMDH]
2726324
2726251
-
Lys
CTT
[ENA]
¡û
>W1610725865
LMFE01000010
Actinomycetota
Nocardia sp. Root136 [LMFE]
450929
451004
+
Lys
CTT
[ENA]
¡û
>W1610730327
LMIS01000001
Actinomycetota
Aeromicrobium sp. Root236 [LMIS]
3692057
3691984
-
Lys
CTT
[ENA]
¡û
>W1610739803
LMQC01000020
Actinomycetota
Modestobacter sp. Leaf380 [LMQC]
173571
173496
-
Lys
CTT
[ENA]
¡û
>W1710065567
BCRD01000002
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
252833
252758
-
Lys
CTT
[ENA]
¡û
>W1710066050
BCRN01000003
Actinomycetota
Millisia brevis NBRC 105863 [BCRN]
313921
313848
-
Lys
CTT
[ENA]
¡û
>W1710066416
BCRU01000003
Actinomycetota
Smaragdicoccus niigatensis DSM 44881 = NBRC 103563 [BCRU]
83172
83247
+
Lys
CTT
[ENA]
¡û
>W1710076955
BDAW01000014
Actinomycetota
Nocardia acidivorans NBRC 108247 [BDAW]
6391
6316
-
Lys
CTT
[ENA]
¡û
>W1710077047
BDAX01000028
Actinomycetota
Nocardia alba NBRC 108234 [BDAX]
9270
9345
+
Lys
CTT
[ENA]
¡û
>W1710077460
BDBG01000003
Actinomycetota
Nocardia salmonicida NBRC 100378 [BDBG]
413355
413430
+
Lys
CTT
[ENA]
¡û
>W1710078041
BDBR01000012
Actinomycetota
Nocardia salmonicida NBRC 13393 [BDBR]
113298
113223
-
Lys
CTT
[ENA]
¡û
>W1710078220
BDBU01000037
Actinomycetota
Nocardia jejuensis NBRC 103114 [BDBU]
32577
32652
+
Lys
CTT
[ENA]
¡û
>W1710078584
BDCB01000034
Actinomycetota
Nocardia salmonicida NBRC 100376 [BDCB]
155016
154941
-
Lys
CTT
[ENA]
¡û
>W1710078714
BDCE01000003
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
31464
31389
-
Lys
CTT
[ENA]
¡û
>W1710078740
BDCE01000047
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
12519
12446
-
Lys
CTT
[ENA]
¡û
>W1710506103
FMUH01000010
Actinomycetota
Klenkia marina DSM 45722 [FMUH]
1870
1945
+
Lys
CTT
[ENA]
¡û
>W1710515973
FNCF01000004
Actinomycetota
Klenkia brasiliensis [FNCF]
54624
54549
-
Lys
CTT
[ENA]
¡û
>W1710524373
FNIR01000006
Actinomycetota
Klenkia soli [FNIR]
54763
54688
-
Lys
CTT
[ENA]
¡û
>W1710558783
FOMD01000004
Actinomycetota
Klenkia taihuensis [FOMD]
55694
55619
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK