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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.329192 (85 seq.)
>W1710875843
LMOS01000004
Actinomycetota
Curtobacterium sp. Leaf154 [LMOS]
622675
622750
+
Thr
CGT
[ENA]
¡û
>W1710996355
LQBJ01000001
Actinomycetota
Kocuria palustris [LQBJ]
28529
28604
+
Thr
CGT
[ENA]
¡û
>W1710996491
LQBM01000001
Actinomycetota
Nesterenkonia jeotgali [LQBM]
300116
300191
+
Thr
CGT
[ENA]
¡û
>W1711043852
LRMP01000001
Actinomycetota
Brachybacterium sp. sponge [LRMP]
1450808
1450883
+
Thr
CGT
[ENA]
¡û
>W1711093388
LTEY01000016
Actinomycetota
Kocuria sp. HMSC066H03 [LTEY]
258585
258510
-
Thr
CGT
[ENA]
¡û
>W1711178113
LWGL01000213
Actinomycetota
Cellulosimicrobium cellulans [LWGL]
2504
2429
-
Thr
CGT
[ENA]
¡û
>W1711186227
LWOB01000063
Actinomycetota
Brachybacterium sp. HMSC06H03 [LWOB]
71706
71781
+
Thr
CGT
[ENA]
¡û
>W1711281814
LZMM01000041
Actinomycetota
Kocuria sp. ICS0012 [LZMM]
10009
10084
+
Thr
CGT
[ENA]
¡û
>W1711613603
MOYN01000055
Actinomycetota
Thermomonospora sp. CIF 1 [MOYN]
33982
34059
+
Thr
CGT
[ENA]
¡û
>C171060474
CP017297
Actinomycetota
Brachybacterium sp. P6-10-X1 [CP017297]
1997910
1997835
-
Thr
CGT
-
¡û
>W131060646
ANHZ02000011
Actinomycetota
Kocuria palustris PEL [ANHZ]
28478
28553
+
Thr
CGT
[ENA]
¡û
>WENV182623800
OJKN01007965
[OJKN] metagenome; surface
95
20
-
Thr
CGT
[ENA]
¢þ
>W141279345
JAGG01000001
Actinomycetota
Microbacterium sp. KROCY2 [JAGG]
177507
177582
+
Thr
CGT
[ENA]
¡û
>C08005763
AP009152
Actinomycetota
Kocuria rhizophila DC2201 [AP009152]
2158354
2158429
+
Thr
CGT
[Ensembl]
¡û
>WENV183749933
PPFU01234477
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1232
1157
-
Thr
CGT
[ENA]
¢þ
>W141426516
JEMO01000020
Actinomycetota
Nesterenkonia sp. AN1 [JEMO]
23087
23012
-
Thr
CGT
[ENA]
¡û
>C181055954
CP022039
Actinomycetota
Kocuria rhizophila FDAARGOS_302 [CP022039]
2366928
2366854
-
Thr
CGT
-
¡û
>C181187310
CP030039
Actinomycetota
Kocuria sp. BT304 [CP030039]
2326138
2326212
+
Thr
CGT
-
¡û
>C181199716
CP031356
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [CP031356]
2205548
2205474
-
Thr
CGT
-
¡û
>C181226847
LT906483
Actinomycetota
Mycolicibacterium thermoresistibile NCTC10409 [LT906483]
4436122
4436047
-
Thr
CGT
-
¡û
>C191051304
CP027295
Actinomycetota
Brachybacterium sp. SGAir0954 [CP027295]
1437693
1437768
+
Thr
CGT
-
¡û
>C191144213
CP035504
Actinomycetota
Kocuria indica CE7 [CP035504]
2258485
2258560
+
Thr
CGT
-
¡û
>W141770704
JOGR01000001
Actinomycetota
Glycomyces sp. NRRL B-16210 [JOGR]
258156
258231
+
Thr
CGT
[ENA]
¡û
>W1910183631
BJNW01000020
Actinomycetota
Kocuria varians NBRC 15358 [BJNW]
29082
29156
+
Thr
CGT
[ENA]
¡û
>W1910374148
FUIA01000025
Actinomycetota
Frigoribacterium sp. JB110 [FUIA]
130735
130808
+
Thr
CGT
[ENA]
¡û
>W1910374257
FUIC01000038
Actinomycetota
Gulosibacter sp. 10 [FUIC]
5502
5427
-
Thr
CGT
[ENA]
¡û
>W1910471638
FXBD01000009
Actinomycetota
Kocuria marina [FXBD]
83167
83092
-
Thr
CGT
[ENA]
¡û
>W1910827514
MWSL01000019
Actinomycetota
Kocuria indica DSM 25126 [MWSL]
16731
16656
-
Thr
CGT
[ENA]
¡û
>W1911149960
NPGE01000001
Actinomycetota
Kocuria varians 80 [NPGE]
916876
916802
-
Thr
CGT
[ENA]
¡û
>W1911203263
NRGR01000004
Actinomycetota
Brachybacterium alimentarium 341_9 [NRGR]
3169
3095
-
Thr
CGT
[ENA]
¡û
>W1911203337
NRGS01000014
Actinomycetota
Brachybacterium alimentarium 908_11 [NRGS]
3153
3079
-
Thr
CGT
[ENA]
¡û
>W1911582745
PHOA01000065
Actinomycetota
Kocuria tytonicola DSM 104133 [PHOA]
12249
12324
+
Thr
CGT
[ENA]
¡û
>W1911681222
QJUG01000223
Actinomycetota
Allorhizocola rhizosphaerae CPCC 204380 [QJUG]
7464
7391
-
Thr
CGT
[ENA]
¡û
>W1911702230
QOCI01000008
Actinomycetota
Brachybacterium paraconglomeratum KCTC 9916 [QOCI]
176908
176982
+
Thr
CGT
[ENA]
¡û
>W1911726643
QSWH01000002
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [QSWH]
30539
30465
-
Thr
CGT
[ENA]
¡û
>W1911765373
QXCP01000009
Actinomycetota
Brachybacterium sp. EE-P12 [QXCP]
374428
374354
-
Thr
CGT
[ENA]
¡û
>W1810189390
PKJA01000001
Actinomycetota
Kocuria rhizophila UMB0131 [PKJA]
28988
29063
+
Thr
CGT
[ENA]
¡û
>W1810196800
PNEZ01000012
Actinomycetota
Microbacterium halophytorum YZYP518 [PNEZ]
42980
42906
-
Thr
CGT
[ENA]
¡û
>W1810196864
PNFB01000002
Actinomycetota
Brachybacterium sp. YJGR34 [PNFB]
198495
198569
+
Thr
CGT
[ENA]
¡û
>W1810197070
PNJG01000045
Actinomycetota
Kocuria tytonis 442 [PNJG]
6991
6916
-
Thr
CGT
[ENA]
¡û
>W1810200190
PNRK01000008
Actinomycetota
Kocuria rhizophila D2 [PNRK]
28934
29009
+
Thr
CGT
[ENA]
¡û
>W1810223848
POTW01000109
Actinomycetota
Jiangella anatolica GTF31 [POTW]
10139
10214
+
Thr
CGT
[ENA]
¡û
>W1810587379
QFKX01000002
Actinomycetota
Brachybacterium endophyticum M1HQ-2 [QFKX]
498278
498352
+
Thr
CGT
[ENA]
¡û
>W1810675531
QKLF01000004
Actinomycetota
Curtobacterium sp. MCJR17_055 [QKLF]
288355
288429
+
Thr
CGT
[ENA]
¡û
>W1810681089
QKSP01000006
Actinomycetota
Curtobacterium sp. MCSS17_005 [QKSP]
90125
90051
-
Thr
CGT
[ENA]
¡û
>W1810681390
QKSV01000006
Actinomycetota
Curtobacterium sp. MCLR17_058 [QKSV]
93403
93477
+
Thr
CGT
[ENA]
¡û
>W1810681887
QKTG01000005
Actinomycetota
Curtobacterium sp. MCLR17_036 [QKTG]
39013
39088
+
Thr
CGT
[ENA]
¡û
>W1810756703
QPGF01000031
Actinomycetota
Brachybacterium alimentarium 738_10 [QPGF]
2776
2702
-
Thr
CGT
[ENA]
¡û
>W1810756744
QPGG01000028
Actinomycetota
Brachybacterium alimentarium 862_8 [QPGG]
5911
5837
-
Thr
CGT
[ENA]
¡û
>W1810756771
QPGH01000016
Actinomycetota
Brachybacterium alimentarium 876_9 [QPGH]
99398
99472
+
Thr
CGT
[ENA]
¡û
>W1810756851
QPGI01000028
Actinomycetota
Brachybacterium alimentarium 900_8 [QPGI]
198940
199014
+
Thr
CGT
[ENA]
¡û
>W1810756874
QPGJ01000011
Actinomycetota
Brachybacterium alimentarium 947_11 [QPGJ]
150219
150293
+
Thr
CGT
[ENA]
¡û
>W1810756931
QPGK01000016
Actinomycetota
Brachybacterium alimentarium 962_10 [QPGK]
142908
142982
+
Thr
CGT
[ENA]
¡û
>W1810757068
QPGM01000002
Actinomycetota
Microbacterium sp. JB110 [QPGM]
6924
6997
+
Thr
CGT
[ENA]
¡û
>W1810757135
QPGN01000008
Actinomycetota
Brachybacterium sp. JB7 [QPGN]
118652
118578
-
Thr
CGT
[ENA]
¡û
>W1810898880
QVAI01000002
Actinomycetota
Jiangella endophytica KE2-3 [QVAI]
37727
37652
-
Thr
CGT
[ENA]
¡û
>W1810912289
QVLP01000007
Actinomycetota
Microbacterium halotolerans YIM 70130 [QVLP]
109416
109491
+
Thr
CGT
[ENA]
¡û
>C151095276
CP012507
Actinomycetota
Kocuria palustris MU14/1 [CP012507]
467868
467793
-
Thr
CGT
-
¡û
>W1510021905
BCAK01000011
Actinomycetota
Brachybacterium sp. SW0106-09 [BCAK]
64365
64440
+
Thr
CGT
[ENA]
¡û
>W1511317258
JPWX01001486
Actinomycetota
Kocuria rhizophila RF [JPWX]
120
195
+
Thr
CGT
[ENA]
¡û
>W1511352686
JROM01000008
Actinomycetota
Kocuria marina SO9-6 [JROM]
19254
19179
-
Thr
CGT
[ENA]
¡û
>W1511352767
JROO01000036
Actinomycetota
Streptomonospora alba YIM 90003 [JROO]
47845
47770
-
Thr
CGT
[ENA]
¡û
>W1511489649
JWTC01000008
Actinomycetota
Kocuria rhizophila TPW45 [JWTC]
137125
137050
-
Thr
CGT
[ENA]
¡û
>W1511690015
LFXL01000027
Actinomycetota
Jiangella muralis DSM 45357 [LFXL]
38654
38579
-
Thr
CGT
[ENA]
¡û
>W11163703
AFID01000006
Actinomycetota
Kocuria rhizophila P7-4 [AFID]
29016
29091
+
Thr
CGT
[ENA]
¡û
>W1610051598
BBHA01000213
Actinomycetota
Brachybacterium zhongshanense JCM 15471 [BBHA]
354
279
-
Thr
CGT
[ENA]
¡û
>W1610069674
BCSR01000022
Actinomycetota
Janibacter corallicola NBRC 107790 [BCSR]
15250
15177
-
Thr
CGT
[ENA]
¡û
>W121018108
AGSO01000004
Actinomycetota
Brachybacterium paraconglomeratum LC44 [AGSO]
378017
377942
-
Thr
CGT
[ENA]
¡û
>W121020661
AGVE01000042
Actinomycetota
Mycolicibacterium thermoresistibile ATCC 19527 [AGVE]
204604
204529
-
Thr
CGT
[ENA]
¡û
>W1610112179
CZJR01000040
Actinomycetota
Kocuria palustris [CZJR]
28785
28860
+
Thr
CGT
[ENA]
¡û
>W1610112361
CZJU01000117
Actinomycetota
Kocuria salsicia [CZJU]
15383
15458
+
Thr
CGT
[ENA]
¡û
>W1610112454
CZJW01000055
Actinomycetota
Kocuria rhizophila [CZJW]
29331
29406
+
Thr
CGT
[ENA]
¡û
>W1610112506
CZJX01000072
Actinomycetota
Kocuria varians [CZJX]
27917
27842
-
Thr
CGT
[ENA]
¡û
>W1610851012
LQBJ01000001
Actinomycetota
Kocuria palustris [LQBJ]
28529
28604
+
Thr
CGT
[ENA]
¡û
>W1610851148
LQBM01000001
Actinomycetota
Nesterenkonia jeotgali [LQBM]
300116
300191
+
Thr
CGT
[ENA]
¡û
>W1610885151
LRMP01000001
Actinomycetota
Brachybacterium sp. sponge [LRMP]
1450808
1450883
+
Thr
CGT
[ENA]
¡û
>W1611041099
LZMM01000041
Actinomycetota
Kocuria sp. ICS0012 [LZMM]
10009
10084
+
Thr
CGT
[ENA]
¡û
>W1710047976
BBHA01000213
Actinomycetota
Brachybacterium zhongshanense JCM 15471 [BBHA]
354
279
-
Thr
CGT
[ENA]
¡û
>W1710067047
BCSR01000022
Actinomycetota
Janibacter corallicola NBRC 107790 [BCSR]
15250
15177
-
Thr
CGT
[ENA]
¡û
>W1710114883
CZJR01000040
Actinomycetota
Kocuria palustris [CZJR]
28785
28860
+
Thr
CGT
[ENA]
¡û
>W1710115065
CZJU01000117
Actinomycetota
Kocuria salsicia [CZJU]
15383
15458
+
Thr
CGT
[ENA]
¡û
>W1710115158
CZJW01000055
Actinomycetota
Kocuria rhizophila [CZJW]
29331
29406
+
Thr
CGT
[ENA]
¡û
>W1710115210
CZJX01000072
Actinomycetota
Kocuria varians [CZJX]
27917
27842
-
Thr
CGT
[ENA]
¡û
>W1710521218
FNGF01000005
Actinomycetota
Glycomyces sambucus [FNGF]
202810
202885
+
Thr
CGT
[ENA]
¡û
>W1710607482
FXAC01000019
Actinomycetota
Kocuria indica [FXAC]
16731
16656
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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